PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G361600.3
Common NamePOPTR_0001s37260g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 411aa    MW: 44674.5 Da    PI: 7.0783
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G361600.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.74.3e-32213270260
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                         dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  ers+ d++++ei+Y+g+H+h+k
  Potri.001G361600.3 213 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIIYKGTHDHPK 270
                         8****************************************.***************85 PP
2WRKY361.4e-11377399123
                         ---SS-EEEEEEE--TT-SS-EE CS
                WRKY   1 ldDgynWrKYGqKevkgsefprs 23 
                         ldDgy+WrKYGqK+v+g+++pr 
  Potri.001G361600.3 377 LDDGYRWRKYGQKVVRGNPNPRY 399
                         59*******************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.871207271IPR003657WRKY domain
SuperFamilySSF1182904.71E-25210271IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.6E-27211271IPR003657WRKY domain
SMARTSM007744.1E-34212270IPR003657WRKY domain
PfamPF031061.1E-24213269IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-13362399IPR003657WRKY domain
SuperFamilySSF1182908.24E-10369406IPR003657WRKY domain
PROSITE profilePS5081115.755372410IPR003657WRKY domain
SMARTSM007742.6E-4377408IPR003657WRKY domain
PfamPF031061.9E-7378403IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MDNNTSRSEV SDCGDPTRPE SGGGGARYKL MSPAKLPISR SACITIPPGL SPTSFLESPV  60
LLSNVKAEPS PTTGTFTKPR TALGSLSSTP YSATTVSSTA CGERKSDYFE FRPYARSNMV  120
SADINHQRST QCAQVQSQCH SQSFASPPLV KGEMEVSTNE LSLSASLHMV TSVASAPAEV  180
DSDELNQTGL SSSGLQASQS DHRAGTAPSM SSDDGYNWRK YGQKHVKGSE FPRSYYKCTH  240
PNCEVKKLFE RSHDGQITEI IYKGTHDHPK PQPSRRYASG SVLSMQEDRF DKSSSLPNQG  300
DKSPGAYGQV PHAIEPNGAL ELSTGANDDT GEGAEDDDDP FSKRRRLDAG GFDVTPVVKP  360
IREPRVVVQT LSEVDILDDG YRWRKYGQKV VRGNPNPRYL LQMHKCWMPS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-162132711574WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1342346KRRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G361600.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002298853.10.0probable WRKY transcription factor 20 isoform X1
SwissprotQ93WV01e-133WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A2K2C9A10.0A0A2K2C9A1_POPTR; Uncharacterized protein
TrEMBLB9GJX10.0B9GJX1_POPTR; Uncharacterized protein
STRINGPOPTR_0001s37260.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.21e-125WRKY family protein