PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.001G346600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB | ||||||||
Protein Properties | Length: 188aa MW: 21431.2 Da PI: 7.8898 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.3 | 4.3e-14 | 5 | 59 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrwqkyl 48 g WT eEd++l ++++ +G g W++ a+ ++Rt+k+c++rw++yl Potri.001G346600.1 5 GCWTLEEDLILTNYIANHGEGVWNSLAKAARlqklqvicLKRTGKSCRLRWLNYL 59 78***************************************************97 PP | |||||||
2 | Myb_DNA-binding | 57.3 | 3.6e-18 | 65 | 108 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE++l+ +++++lG++ W++Ia++++ gRt++++k++w++ Potri.001G346600.1 65 RGNITPEEQLLIMELHAKLGNR-WSKIAKHLP-GRTDNEIKNYWRT 108 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.272 | 1 | 59 | IPR017930 | Myb domain |
SMART | SM00717 | 1.6E-8 | 3 | 61 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.1E-13 | 5 | 59 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.5E-27 | 5 | 106 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.7E-20 | 6 | 66 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.87E-8 | 7 | 59 | No hit | No description |
PROSITE profile | PS51294 | 26.122 | 60 | 114 | IPR017930 | Myb domain |
SMART | SM00717 | 2.3E-16 | 64 | 112 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.2E-17 | 65 | 108 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.0E-26 | 67 | 113 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.37E-12 | 69 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0080086 | Biological Process | stamen filament development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MQLSGCWTLE EDLILTNYIA NHGEGVWNSL AKAARLQKLQ VICLKRTGKS CRLRWLNYLR 60 PDLRRGNITP EEQLLIMELH AKLGNRWSKI AKHLPGRTDN EIKNYWRTRI KKHTKQTEPF 120 AAGSSETNEH GSSTCQVSSA TDQMETYCPP FYQGDVGAFS GGNIPQELNE NYWSMEDLWS 180 MQLLNGD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-23 | 3 | 112 | 6 | 106 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: First detected in 15-20 mm buds. Expression increases as flowers develop. {ECO:0000269|PubMed:1840903}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed only in flowers. {ECO:0000269|PubMed:1840903}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.001G346600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ497053 | 0.0 | FJ497053.1 Populus x canadensis MYBF1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011005145.1 | 1e-121 | PREDICTED: myb-related protein 305 isoform X2 | ||||
Swissprot | P81391 | 4e-73 | MYB05_ANTMA; Myb-related protein 305 | ||||
TrEMBL | E4W678 | 1e-120 | E4W678_POPCA; MYBF1 | ||||
STRING | evm.model.supercontig_186.7 | 4e-90 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3305 | 34 | 69 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27810.1 | 2e-74 | myb domain protein 21 |
Link Out ? help Back to Top | |
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Phytozome | Potri.001G346600.1 |
Publications ? help Back to Top | |||
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