PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G325100.1
Common NamePOPTR_0001s33260g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 247aa    MW: 28065.2 Da    PI: 10.1069
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G325100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM121.85.9e-38141401128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk...sgyWkatgk 88 
                         lp G+rFhPtdeelvv+yLk+kv g +l++  vi+e+d+++++Pw+Lp ++   +++ yfFs+++ +   g++ +r++    sgyWk  gk
  Potri.001G325100.1  14 LPIGYRFHPTDEELVVHYLKRKVLGLPLPA-AVIPEFDVFQTDPWSLPGNL---KEKRYFFSQKKLND-FGTKCKRSAGyipSGYWKPVGK 99 
                         699***************************.89***************544...4578***9987765.5777777543444********* PP

                 NAM  89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          k+++++ ++++vg++ktLvf + ++++ ++t+Wvmhey l
  Potri.001G325100.1 100 GKQIVASgSNQAVGIRKTLVFRERNHSSKTRTQWVMHEYCL 140
                         ****99966778**********9999999**********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.28E-4211165IPR003441NAC domain
PROSITE profilePS5100542.40814165IPR003441NAC domain
PfamPF023656.7E-2415140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MERPNFVENG GLRLPIGYRF HPTDEELVVH YLKRKVLGLP LPAAVIPEFD VFQTDPWSLP  60
GNLKEKRYFF SQKKLNDFGT KCKRSAGYIP SGYWKPVGKG KQIVASGSNQ AVGIRKTLVF  120
RERNHSSKTR TQWVMHEYCL VGLPTDPKTT QMKVGDWVAN SIFHRKRKPK NHVVMISNPS  180
NINKRQNVEI ISPSFMDFMM EQSSDEAGAP SQCSSGVTEV SSNEFDQEEI SSFISLFTYP  240
CKRKRT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-271216618169NAC domain-containing protein 19
3swm_B2e-271216618169NAC domain-containing protein 19
3swm_C2e-271216618169NAC domain-containing protein 19
3swm_D2e-271216618169NAC domain-containing protein 19
3swp_A2e-271216618169NAC domain-containing protein 19
3swp_B2e-271216618169NAC domain-containing protein 19
3swp_C2e-271216618169NAC domain-containing protein 19
3swp_D2e-271216618169NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G325100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7699960.0KP769996.1 Populus tomentosa NAC domain transcription factor (Potri.017G063300) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002298652.20.0NAC domain-containing protein 83
TrEMBLB9GF720.0B9GF72_POPTR; NAC family protein
STRINGPOPTR_0001s33260.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70434139
Representative plantOGRP1179656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-50NAC domain containing protein 83