PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.001G324600.1 | ||||||||
Common Name | POPTR_0001s33210g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | C2H2 | ||||||||
Protein Properties | Length: 198aa MW: 21686.9 Da PI: 8.2556 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.8 | 0.00017 | 43 | 65 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C+++F ++ L H++ H Potri.001G324600.1 43 FPCLYCPRRFYTSQALGGHQNAH 65 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 9.55E-6 | 40 | 70 | No hit | No description |
PROSITE profile | PS50157 | 10.616 | 43 | 70 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 45 | 65 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MADPSIFNFL NHQHQQYPSS SSSSKPTKKS STNLPQPSSS RHFPCLYCPR RFYTSQALGG 60 HQNAHKRERA ALRRNNTTLN TSISTDPSLI IPSSFLNHNL PPPASTPAVP FFNQYHRYHQ 120 QALDHPMMIT NYQFPAPPST NGVYVSAPHY GGLYGVSAAA TSLDHDIGST GSGYDLSTST 180 DNDDPNDPTN IDLTLRL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.001G324600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC216452 | 8e-89 | AC216452.1 Populus trichocarpa clone POP018-D02, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002298656.1 | 1e-142 | protein LATE FLOWERING | ||||
TrEMBL | B9GFF8 | 1e-141 | B9GFF8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s33210.1 | 1e-142 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15014 | 8 | 11 | Representative plant | OGRP82 | 15 | 137 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14010.1 | 2e-18 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.001G324600.1 |
Entrez Gene | 7495814 |