PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.001G295500.1 | ||||||||
Common Name | POPTR_0001s30260g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | C2H2 | ||||||||
Protein Properties | Length: 241aa MW: 25363.3 Da PI: 8.2854 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.8 | 0.00017 | 67 | 89 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k Fs+ L H +H Potri.001G295500.1 67 YKCTVCNKAFSSYQALGGHKASH 89 9***********99999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 3.3E-4 | 66 | 91 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 5.84E-10 | 67 | 89 | No hit | No description |
Pfam | PF13912 | 4.0E-13 | 67 | 91 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.679 | 67 | 94 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0073 | 67 | 89 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 69 | 89 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.84E-10 | 118 | 145 | No hit | No description |
Pfam | PF13912 | 2.4E-11 | 122 | 147 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.245 | 123 | 145 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1.7 | 123 | 145 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 125 | 145 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MALEALNSPT TAAPFNYEET WIKRKRSKRP RSESPSTEEE YLALCLIMLA RGGSPAPPQP 60 PTLDLSYKCT VCNKAFSSYQ ALGGHKASHR KSSSESTVAT AAENPSTSTT TNTTTTTTNG 120 RTHECSICHK TFLTGQALGG HKRCHYEGTI GGNNSSSASA AITTSDGGAV GGGGVIQSKS 180 QRSGGGFDFD LNLPALPEFE GPRISLQALC GDQEVESPLP GKKPRLMFSL KQEKTDMGSS 240 * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.4868 | 0.0 | stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems and leaves. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:8662738, ECO:0000269|PubMed:9132053}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor involved in abiotic stress responses. Can repress the stress responsive genes DREB1A and LTI78. Probably involved in jasmonate (JA) early signaling response. May regulate the expression of the JA biosynthesis gene LOX3 and control the expression of TIFY10A/JAZ1, a key repressor in the JA signaling cascade. {ECO:0000269|PubMed:12032082, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:17112521, ECO:0000269|PubMed:18216250, ECO:0000269|PubMed:20140232, ECO:0000269|PubMed:8662738}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.001G295500.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt, cold and drought stresses. Down-regulated by gibberellin. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:11351099, ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:17112521, ECO:0000269|PubMed:8662738}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF145317 | 0.0 | EF145317.1 Populus trichocarpa clone WS01123_D03. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024458091.1 | 1e-178 | zinc finger protein ZAT10 | ||||
Swissprot | Q96289 | 6e-60 | ZAT10_ARATH; Zinc finger protein ZAT10 | ||||
TrEMBL | A0A2K2C5R1 | 1e-176 | A0A2K2C5R1_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s30260.1 | 1e-176 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1327 | 32 | 91 | Representative plant | OGRP131 | 15 | 149 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27730.1 | 6e-44 | salt tolerance zinc finger |
Link Out ? help Back to Top | |
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Phytozome | Potri.001G295500.1 |
Entrez Gene | 7465068 |