PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G280300.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 412aa    MW: 46104.9 Da    PI: 4.6903
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G280300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS57.33.2e-1820625686135
                GRAS  86 evsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasR 135
                         e++P+ +f+h+taN+ Ilea+ ++ + vHi+Dfd++qG+QWp++++ La  
  Potri.001G280300.1 206 EIFPYGRFAHFTANSVILEALPEDaDIVHIVDFDVGQGVQWPPMIEDLARL 256
                         79*******************8876999********************954 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS509859.73596411IPR005202Transcription factor GRAS
PfamPF035141.1E-15206256IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MAEYLQSYRR SRGFFRNRDG QLSSHPDHSF SCISIEDFSD VSSSIPFSPV IHVDEPPSFP  60
ILVDDWPVTM FRPVEQKCSL FSESDITLDD PVLMVNEIED ISDLLASESS PPALHNFPGD  120
DAGSLLREVS IGTLMNQISL ILPGIGMEFD NQLSILHLLK AYGEAEEMET KELAGKIMSQ  180
LKEKACPFGS TVERLAYYMI QALEGEIFPY GRFAHFTANS VILEALPEDA DIVHIVDFDV  240
GQGVQWPPMI EDLARLKMKE MDKEALVTEM KKTKKRGIRS EWLAFNCAVG LPQMGKGKSA  300
SSLVEFLRLA NDSIRLDGEG VSGTRGIITI ARESKALSEV GLQAWRMRED SLMEAKELIR  360
ETESFYCAAI EGVKENQLVL SYMGIPLVKT YPGRFKDPIR LRVPGQMWHQ K*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G280300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1487950.0EF148795.1 Populus trichocarpa x Populus deltoides clone WS0138_A18 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024439213.10.0DELLA protein GAI1
TrEMBLA0A3N7ECJ61e-146A0A3N7ECJ6_POPTR; Uncharacterized protein
STRINGPOPTR_0009s07930.11e-157(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3956122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.14e-13GRAS family protein