PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.001G268200.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | C3H | ||||||||
Protein Properties | Length: 297aa MW: 33084.8 Da PI: 7.9998 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.3 | 2.1e-06 | 3 | 26 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k++lC+ffa G C G+ C F+H+ Potri.001G268200.4 3 KRVLCKFFAH-GACLKGEHCEFSHD 26 99****6666.*************5 PP | |||||||
2 | zf-CCCH | 26.4 | 1.2e-08 | 34 | 54 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C f+++ G+C+yG+rC++ H+ Potri.001G268200.4 34 ICTFYQK-GICSYGSRCRYEHV 54 7******.***********997 PP | |||||||
3 | zf-CCCH | 21.5 | 4.1e-07 | 141 | 163 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C+ fa+ G C++Gd+C+ +Hg Potri.001G268200.4 141 RSICS-FAAAGSCPRGDKCPHIHG 163 67899.**************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.671 | 1 | 28 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.4E-5 | 1 | 27 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.88E-7 | 3 | 26 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.7E-4 | 3 | 28 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.394 | 29 | 56 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.0E-4 | 30 | 55 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-5 | 32 | 53 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.1E-6 | 34 | 54 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.3E-4 | 34 | 53 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.056 | 138 | 165 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0022 | 139 | 164 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-4 | 141 | 163 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-4 | 143 | 163 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:3.30.40.10 | 3.1E-10 | 202 | 266 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
SuperFamily | SSF57850 | 3.3E-10 | 203 | 273 | No hit | No description |
CDD | cd00162 | 0.00175 | 206 | 266 | No hit | No description |
SMART | SM00184 | 2.9E-7 | 207 | 264 | IPR001841 | Zinc finger, RING-type |
PROSITE profile | PS50089 | 12.297 | 207 | 265 | IPR001841 | Zinc finger, RING-type |
Pfam | PF00097 | 2.7E-7 | 207 | 264 | IPR018957 | Zinc finger, C3HC4 RING-type |
PROSITE pattern | PS00518 | 0 | 231 | 240 | IPR017907 | Zinc finger, RING-type, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MSKRVLCKFF AHGACLKGEH CEFSHDWKDP PNNICTFYQK GICSYGSRCR YEHVKPSRPE 60 STASSSLTVP CQPLGSNSVS LALPARNVSN GVTTVPGVPP ELSSRPFIAP TAPEWNLESA 120 QHDFLEDGEV IEPRNVKPAD RSICSFAAAG SCPRGDKCPH IHGDLCAYCG KHCLHPFRPE 180 ERDEHLKACE KKQKNLDLLK YSQEIECSVC LDRVLSKPTA AERKFGLLSE CDHPFCISCI 240 RNWRSSSPTS GMDVNTSLRA CPICRKLSYF VIPSVIWYSS KEEKQEIVDT YKAKLR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.001G268200.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC208479 | 0.0 | AC208479.1 Populus trichocarpa clone JGIACSB1081-D15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024441871.1 | 0.0 | putative RING-type E3 ubiquitin transferase C3H69 | ||||
Refseq | XP_024441875.1 | 0.0 | putative RING-type E3 ubiquitin transferase C3H69 | ||||
Swissprot | E0X9N4 | 1e-135 | C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69 | ||||
TrEMBL | A0A2K2C4A4 | 0.0 | A0A2K2C4A4_POPTR; C3H family protein | ||||
STRING | POPTR_0009s06730.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08505.2 | 1e-125 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.001G268200.4 |
Publications ? help Back to Top | |||
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