PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G266700.1
Common NamePOPTR_0001s27370g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 711aa    MW: 77599 Da    PI: 6.9293
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G266700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.3e-07291311526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         +C++f++ G C++Gd C +aHg
  Potri.001G266700.1 291 PCPDFRK-GACRRGDMCEYAHG 311
                         8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.203.9E-189163IPR020683Ankyrin repeat-containing domain
SMARTSM002487901040IPR002110Ankyrin repeat
SuperFamilySSF484036.68E-1714132IPR020683Ankyrin repeat-containing domain
PfamPF127962.1E-1049124IPR020683Ankyrin repeat-containing domain
SMARTSM002482.3E-45787IPR002110Ankyrin repeat
PROSITE profilePS500888.5235780IPR002110Ankyrin repeat
PROSITE profilePS5029715.9157132IPR020683Ankyrin repeat-containing domain
PRINTSPR014153.7E-55873IPR002110Ankyrin repeat
CDDcd002048.64E-1559132No hitNo description
PROSITE profilePS5008811.35492127IPR002110Ankyrin repeat
SMARTSM002480.001292124IPR002110Ankyrin repeat
PRINTSPR014153.7E-5111125IPR002110Ankyrin repeat
SMARTSM003564.0E-6286312IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-4291313IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-5291311IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582291313IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-4319349IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.183321345IPR000571Zinc finger, CCCH-type
SMARTSM0035624321344IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 711 aa     Download sequence    Send to blast
MNFLSVETED AFSSLLELAA NNDAEGFKRF IKRDASSINE AGFWYIRQKG SKQIVLDQRT  60
PLMVAATYGS LDVLKLILDH TKVDVNLSCG KEKTTALHCA SSGGSINVVD VVKLLLSAGA  120
DPNCLDVNGD RPGDVIVVPP KLQSMKVALE ELLSKTDSDG SVAEHDFNGS VGVSNLRVSI  180
SNSNFSSPTL SSSPENGSPP SPSVLIYSPR ASKFNNLPGS STPEKKEYPI DPSLPDIKNS  240
IYATDEFRMF SFKVRPCSRA YSHDWTECPF VHPGENARRR DPRKFHYSCV PCPDFRKGAC  300
RRGDMCEYAH GVFECWLHPA QYRTRLCKDG TSCNRQVCFF AHTPEELRPL YVSTGSAIPS  360
PRSSQSAASV MDMAAALSLL PGSPSSVSAM SPTPFNQPMS PANGISHSSM AWPQPNVPTL  420
HLPGSNFQSS RLRSSFSARD IPPEDFNLLP DFDSQQQILN DLTCFSQSQN NSASFSRSGW  480
SKTLNPSNLE ELFTAEMSSP RFADQAAAVF SPTHKSAYLN QLQQQQSMLS PINTSAFSPK  540
NVEHHLLHSA FGAGSPGRMS PRSMEPISPR GSRLSTLAQR EKQQQQLRSL SSRDLGSNNP  600
VAHNVNSWSK WGSPNGKLDW SVNGDELGRL CRSSSFELGN NGEEPDLSWV QSLVKESPPE  660
VLKEKLAIPV PGAAPSPDVA MGLSSNSQIN PVLESWLEQM QIDKKQQPVV *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.29840.0bud| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G266700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1451490.0EF145149.1 Populus trichocarpa clone WS01121_A14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002298434.10.0zinc finger CCCH domain-containing protein 30
RefseqXP_024438269.10.0zinc finger CCCH domain-containing protein 30
RefseqXP_024438276.10.0zinc finger CCCH domain-containing protein 30
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA9PAD30.0A9PAD3_POPTR; Uncharacterized protein
STRINGPOPTR_0001s27370.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17323395
Representative plantOGRP7091569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ralph SG, et al.
    Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding.
    BMC Genomics, 2008. 9: p. 57
    [PMID:18230180]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]