PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G258400.1
Common NamePOPTR_0001s26560g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 689aa    MW: 75576.5 Da    PI: 7.0026
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G258400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.29.1e-063063221026
                         GGTS--TTTTT-SS-SS CS
             zf-CCCH  10 artGtCkyGdrCkFaHg 26 
                         +r+GtC++Gd C +aHg
  Potri.001G258400.1 306 HRNGTCRRGDLCEYAHG 322
                         689*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500888.65683105IPR002110Ankyrin repeat
PfamPF127961.1E-983152IPR020683Ankyrin repeat-containing domain
SMARTSM002480.002983113IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.201.5E-1583164IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.05183183IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.31E-1584162IPR020683Ankyrin repeat-containing domain
CDDcd002046.89E-1585161No hitNo description
PROSITE profilePS5008811.968118153IPR002110Ankyrin repeat
SMARTSM002480.0019118150IPR002110Ankyrin repeat
SMARTSM003560.026297323IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.075302324IPR000571Zinc finger, CCCH-type
SMARTSM0035622332355IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 689 aa     Download sequence    Send to blast
MCQWPNQSKK SQTMTPLSPM ESNSFTEDMS YSIDTEHSFS SLLEFAAGND VEGFRRSVFD  60
ESEVKQVGLW YGRHGGSRKM VLEQRTPLMI AAKYGSVDIV KLILSLPEVD INFCCGPDKS  120
TALHCAVSGG SVNAISVVKL LLLAGADTNA FDANGCRPID VIVAPSKFPH LKIALEELLK  180
NGSVCQWDMM PVSCPSLRSS SPSLSSLIDE GSSSSPSGSI LSPVTRMPND VHSSAKKGYP  240
VDPTIPDIKN SVYASDEFRM FSFKIQRCSR AYAHDWTECP FVHPGENARR RDPRKFHYSC  300
APCPGHRNGT CRRGDLCEYA HGIFESWLHP TQYKTRLCKE GTNCMRRVCF FAHTSNELRS  360
LNMSTGAASS KVDVMDFTTA SKLLPSSPSA VSSTSPSTFN PLKHLSSNSS HPSVPWPQQT  420
IPNLHSSLQA SRLRSSLNAR DISSEELNGL RDFAFQQHLP LNEPSSFSQL QYNGSYTDLF  480
SPSNTLNHSN LDKIFYANVS SPQHPEQLGG AASVFSPTYS SAALNQQQQH QKSKASRIQG  540
ISSYINYPVS SLGSQLSAHV RREKMLQQLQ SSLLSQKFSS KPSYDLGSNG TNSGSIWKSE  600
NRNVDRFIQA DEMGQPRTSC SIEHVGEEPD VSWVHSMLKD SPSETNEATA IPVSAILDGS  660
TSNPHIESSD YVALQAWLDG LQLDQNVA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G258400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002298403.30.0zinc finger CCCH domain-containing protein 56
SwissprotQ9LXV40.0C3H56_ARATH; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A3N7FDG40.0A0A3N7FDG4_POPTR; Uncharacterized protein
STRINGPOPTR_0001s26560.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1776055
Representative plantOGRP7091569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12850.11e-172CCCH-type zinc finger protein with ARM repeat domain