PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G252600.1
Common NamePOPTR_0001s25960g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 705aa    MW: 76432.9 Da    PI: 6.1368
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G252600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.71.5e-06279299526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         +C+ f++ G C+ Gd C +aHg
  Potri.001G252600.1 279 PCPEFRK-GSCRQGDACEYAHG 299
                         8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484039.64E-1534150IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.5E-1545155IPR020683Ankyrin repeat-containing domain
PfamPF127968.4E-971144IPR020683Ankyrin repeat-containing domain
SMARTSM002480.008575105IPR002110Ankyrin repeat
PROSITE profilePS5029716.54775150IPR020683Ankyrin repeat-containing domain
CDDcd002042.19E-1377150No hitNo description
PROSITE profilePS5008811.968110145IPR002110Ankyrin repeat
SMARTSM002480.0023110142IPR002110Ankyrin repeat
SMARTSM003561.0E-4274300IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.662279301IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.944309333IPR000571Zinc finger, CCCH-type
SMARTSM0035631309332IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 705 aa     Download sequence    Send to blast
MCSGTKRKPT HTGFNMENEF RKEDGVCYDF SGLLELSALN DLIGFKKAIE EEGHDVDMPG  60
LWYGRRIGSK KMGFEERTPL MIAALFGSKD VLNYILETGH VDVNRGYGSD GATALHCAAA  120
GGSSSAPEVA RLLLDASADP NSVDANGNLP GDLIAPVVKS GSNSRRKTLE IMLKGGTSGE  180
ETCVLADQIV DEMDGMEQQE VPMPRVSKDG SEKKEYPIDL TLPDIKNGMY GTDEFRMYTF  240
KVKPCSRAYS HDWTECPFVH PGENARRRDP RKYHYSCVPC PEFRKGSCRQ GDACEYAHGI  300
FECWLHPAQY RTRLCKDETG CTRRVCFFAH KPEELRPLYA STGSAVPSPR SYSANGSIFD  360
MSSISPLSLG SSSVLMPSTS TPPMTPSGSS SPMGGWTNQS NVVPPALQLP GSRLKAAFCA  420
RDMDLDMELL GLESHRRRQQ LMDEISGLSS PSSWNNGLST APAFTASGDR TGELNRLGGV  480
RPTNLEDMFG SLDPSILPQL QGLSLDGSTT HLQSPTGLQM RQNINQQLRS SYPTSFSSSP  540
VRTSPSFGMD HSGGAAAAVL SSRSAAFAKR SQSFVERNAV NRHPVFSSPA KVMPPNLSDW  600
GSPDGKLDWG IQGEELNKLR KSASFGFRSD GSSFATAAAS VPATVGEPDV SWVQSLVKDT  660
PPVKPGPLGL EQQQQQQCHL NIGGSEMLPA WVEQLYIEQE PLVA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.129780.0bud
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00566DAPTransfer from AT5G58620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G252600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0286475e-90CT028647.1 Poplar cDNA sequences.
GenBankCT0290825e-90CT029082.1 Poplar cDNA sequences.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002299802.30.0zinc finger CCCH domain-containing protein 66
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A2K2C3G10.0A0A2K2C3G1_POPTR; Uncharacterized protein
STRINGPOPTR_0001s25960.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Representative plantOGRP7091569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein