PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G249900.2
Common NamePOPTR_0001s25700g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 333aa    MW: 37334.3 Da    PI: 10.0047
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G249900.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.6e-05142165123
                         EEETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                         ++C+ Cg++F  + +L++H+   H
  Potri.001G249900.2 142 FPCTACGEVFQKPQLLEQHQAIkH 165
                         89******************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.785142170IPR007087Zinc finger, C2H2
PROSITE patternPS000280144165IPR007087Zinc finger, C2H2
SuperFamilySSF563998.06E-7167327No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MATNRGLVFN KFLSFFILLL HLGCFIFKAK LDDRHPAKKR KKVSPLAPIS SSHSRLKPHK  60
ALSSSWSYLK SIFSGKTSKT QTQPAAPTLT SARSSQQSIV SMILPDQTHL SELPPRKKST  120
GSCEEPDIST DHQFFPLRND IFPCTACGEV FQKPQLLEQH QAIKHAVTQL LDGDSGKNIV  180
DIIFKTGWSC KEKSPEIRRI LKIHNSPKIL SRFEEYREFV KTKAARNSPI KRRDERCIAD  240
GNELLRFFCS TFMCDLGLNG DSSICNQQYC SVCGIIKSGF SPKMDGISTL STSWRAHMAF  300
PEEIEEEFKF MNVKRAMLVC RVVAGRIGSV GV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13741KKRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.136280.0stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G249900.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002299819.20.0uncharacterized protein LOC7478541
TrEMBLB9GIT80.0B9GIT8_POPTR; C2H2 family protein
STRINGPOPTR_0001s25700.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.11e-103C2H2 family protein