PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G241600.1
Common NamePOPTR_0001s24840g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 721aa    MW: 79506.8 Da    PI: 9.3448
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G241600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.21.7e-07620669147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                         r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  Potri.001G241600.1 620 RRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 669
                         6789999*******************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542365.32E-5425514IPR029071Ubiquitin-related domain
PROSITE profilePS500538.982430500IPR000626Ubiquitin domain
PROSITE profilePS5129414.733615674IPR017930Myb domain
SMARTSM007172.0E-7619672IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-10620670IPR009057Homeodomain-like
CDDcd116602.12E-17621671No hitNo description
SuperFamilySSF466891.35E-15621702IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031627Biological Processtelomeric loop formation
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 721 aa     Download sequence    Send to blast
MVLQKRLDYG FNGYQVPHMP RATRSARRRR SFKKKHEENQ MCAFDLLAIV AGKLLLDKES  60
APSSSNTSAD KDQCAVVNSA VKYEWQDEEK PLKVEACDQG SAARNFFVSD LSQVHGQGCS  120
SKESLVIQNN LNLRLASALT KSDCAGRSNA EKLRNDKSKN DIGTFASKVE GVSSEYREFG  180
DCKLEVETKR AVKDEPGKSG VVLSSTAANM CSLEDPVVLD AKPPALASLD SCAKVPLCRN  240
HIPNSSYPTN QDDVNVVSRD DDDNSSGCTH PITKKKFFRP APRIGDRRIR KILASKYWKV  300
APKFKDATVS NSDGDLKPVF HKRKNYYRQQ RSERLYPFKK RKHYAYSSPS NLDGGLSCEF  360
VSDSPRKGSN GDASGSCTRM HGVTGASSSF VAQHTSFQPR DSHGMRTFNG GASSSFVGQR  420
TSFQPRDCHV KLRIKSFRVP ELLVEIPESS TVGLLRRTVM EAVTAILGGG LRVGVLLQGK  480
KVRDDNKTLL QTGISHNNQL DSLGFCLEPN PSQTPPSLCP EDSPFLLQCD TPDPISRCPP  540
TAGVVCQGIC TGSPEPHANN LGNCIESDHD SASSPTDTSM DKSTNSKALV AVPAMKVEAL  600
AVVPAHQKSK QSEIVQRRIR RPFSVAEVEA LVQAVEKLGT GRWRDVKLRA FDNAKHRTYV  660
DLKDKWKTLV HTARISPQQR RGEPVPQELL DRVLTAHAYW SQQQADQQFK HQHAETCLLL  720
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A2e-566047201112Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12834RRSFKKK
2321341KRKNYYRQQRSERLYPFKKRK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed ubiquitously. {ECO:0000269|PubMed:15364931}.
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G241600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2089320.0AC208932.1 Populus trichocarpa clone JGIACSB1081-D10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002299868.20.0telomere repeat-binding protein 2 isoform X1
SwissprotQ6R0E31e-147TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLB9GJM20.0B9GJM2_POPTR; Uncharacterized protein
STRINGPOPTR_0001s24840.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13562844
Representative plantOGRP13911225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-122TRF-like 2