PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.001G237900.1 | ||||||||
Common Name | POPTR_0001s24470g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | WOX | ||||||||
Protein Properties | Length: 246aa MW: 27882.2 Da PI: 8.4647 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.7 | 2.7e-20 | 13 | 72 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++tkeq+ Le+++ + r+ps+e++e++A++l +++ ++V++WFqN++a++++ Potri.001G237900.1 13 SRWSPTKEQISMLESFYSQgIRTPSTEMIEQIASRLkaygHIEGKNVFYWFQNHKARQRQ 72 7*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 108.1 | 5.2e-35 | 12 | 74 | 3 | 65 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++RW+Pt+eQi +Le+ y++G+rtP++e i++i+++L++yG+ie+kNVfyWFQN+kaR+rqkq Potri.001G237900.1 12 NSRWSPTKEQISMLESFYSQGIRTPSTEMIEQIASRLKAYGHIEGKNVFYWFQNHKARQRQKQ 74 79***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 11.531 | 8 | 73 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.9E-7 | 10 | 77 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 9.84E-14 | 12 | 79 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 4.1E-18 | 13 | 72 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 9.9E-10 | 13 | 72 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.91E-7 | 14 | 74 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MDVSSSGGAS VNSRWSPTKE QISMLESFYS QGIRTPSTEM IEQIASRLKA YGHIEGKNVF 60 YWFQNHKARQ RQKQKQENMA YINKYLHKAH QPVFAPPCRN VVNSPCYLPK SDIMGLCQQH 120 QNMLLPGNFK RRSRSETISY AFKGYDQEAV LREYHNHITK NKFERSPVTI DKSSSDQETL 180 PLFPLHPTGI LEGASPIFSH GSTSAENSIN TPISSEITHG IGEHSADHKP FFDFFSEKDP 240 FESSH* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.001G237900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF982701 | 0.0 | KF982701.1 Populus tomentosa WOX2a (WOX2a) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011000265.1 | 1e-175 | PREDICTED: WUSCHEL-related homeobox 2-like | ||||
TrEMBL | B9GJQ1 | 0.0 | B9GJQ1_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s24470.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8256 | 30 | 44 | Representative plant | OGRP8582 | 11 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59340.1 | 1e-51 | WUSCHEL related homeobox 2 |
Link Out ? help Back to Top | |
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Phytozome | Potri.001G237900.1 |
Entrez Gene | 7465122 |