PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G224600.1
Common NamePOPTR_0001s23180g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 519aa    MW: 56786.9 Da    PI: 8.1475
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G224600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.60.0018145166223
                         EETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                         +C  C k+F++  +L  H+r H
  Potri.001G224600.1 145 TCCLCAKVFPSMNSLFGHMRFH 166
                         6*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003555.66890IPR015880Zinc finger, C2H2-like
PfamPF139123.0E-96892IPR007087Zinc finger, C2H2
PROSITE profilePS501578.7876895IPR007087Zinc finger, C2H2
SuperFamilySSF576677.26E-66990No hitNo description
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
SuperFamilySSF576677.26E-6140166No hitNo description
SMARTSM003550.81144166IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.621144166IPR007087Zinc finger, C2H2
PROSITE patternPS000280146166IPR007087Zinc finger, C2H2
PfamPF139120.0012146167IPR007087Zinc finger, C2H2
SuperFamilySSF576673.45E-5435460No hitNo description
PROSITE profilePS501579.827436458IPR007087Zinc finger, C2H2
SMARTSM003550.032436458IPR015880Zinc finger, C2H2-like
PfamPF139121.9E-13436460IPR007087Zinc finger, C2H2
PROSITE patternPS000280438458IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MDDHERELFQ GDHYPAKVTA AKPVASQPLD PLASKSKFCF KIKIANSSKP SGDDREGSAA  60
DLHGPGYRVC EYCGKEFSSG KAWGGHKRHH LKNDKDLKKA KKLELTKIQR EKTKKHELKL  120
SKSNASRCNT IKAGDVSVAS GGKPTCCLCA KVFPSMNSLF GHMRFHPDRG WKGTQPPSFS  180
DKHSSSSSLS ESAAGLEVDQ IGLAMEKGLD DGVDLLASLS SWNKRDKRGR TLDPVEAVCD  240
LDPVVAACNL IELSRDGTGQ LEKKKIEEVR QSKKLKINDE SATYKSFQPK NSGKPMDDQK  300
AVAFDSEGGV SCWFNEEKGK TKRESDEQDD ESHSMITKKK KKKMMMMNWM CKLNDSETSK  360
GTGSYKIGCR SYDKAFPTFH APGGHVPPGL ANADRAELLD YNSNMDVKGH VLSSTEVKQS  420
EEIEEEGSVP MGISSFQCDI CHKTFPTGQA LGGHKRCHWK GPVKATPSHE VALLGEASQN  480
TSNTESSGEA NQAGEPTRAS ACRLSFDLNM PYIMEDGQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G224600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002298148.30.0uncharacterized protein LOC7486650
TrEMBLA0A2K2C1Y60.0A0A2K2C1Y6_POPTR; Uncharacterized protein
STRINGPOPTR_0001s23180.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97372437
Representative plantOGRP1249135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.14e-14C2H2 family protein