PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G216600.2
Common NamePOPTR_0001s22430g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TALE
Protein Properties Length: 733aa    MW: 79768.9 Da    PI: 7.7004
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G216600.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.11.7e-094264631954
                         HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  Potri.001G216600.2 426 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 463
                         554459******************************88 PP
2BELL120.38.5e-39291361272
                BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         rqelq+kkakL+++l+eVd+rY+qy++q+q+v+ssFe++ag+g+ak+Yt+lAl++iSr+Fr+Lkd ia+qi
  Potri.001G216600.2 291 RQELQMKKAKLVTMLDEVDQRYRQYHHQMQVVVSSFEQAAGYGAAKSYTALALQTISRQFRSLKDTIASQI 361
                         89********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.0E-58214359IPR006563POX domain
PfamPF075261.8E-47219358IPR006563POX domain
PROSITE profilePS5007112.131404467IPR001356Homeobox domain
SMARTSM003892.3E-9407471IPR001356Homeobox domain
CDDcd000861.06E-12407468No hitNo description
SuperFamilySSF466898.13E-17408473IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.6E-29410473IPR009057Homeodomain-like
PfamPF059203.1E-18424463IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 733 aa     Download sequence    Send to blast
MATYFHGSSE IQAAAAPSDG IQTLYLMNPN YLSSYSDATQ QQHQQQSPNM IFFNHSNTVN  60
NSLSHGPPQN HHFVGIPLPV PSSNITSSVP DNHSRPSSLH GVVPSVHYNI WGSIDQNSVA  120
SAATASESSG AHDVMSSQVG FRRPVVVSPG RQGLSLSLSS QQAPAPPTPY SRAISNEHEI  180
QALHPHVSVV SSGDEIRLSG NSPPSVSAVS NGVSCMQNMV LGSKYLRATQ ELLDEVANVG  240
KDLIKSGIIA RTKEKMKMTK ESITGDGSDG SGEAVGETSA KRGADLTTAH RQELQMKKAK  300
LVTMLDEVDQ RYRQYHHQMQ VVVSSFEQAA GYGAAKSYTA LALQTISRQF RSLKDTIASQ  360
IRATSKSLGE EDCIGAKVEG SRLRYVDHQL RQQRALQQLG MVQHNAWRPQ RGLPERAVSV  420
LRAWLFEHFL HPYPKDSDKH MLAKQTGLTR SQVSNWFINA RVRLWKPMVE EMYLEEIKER  480
EKDGSEESGG KNENKESGSH SSAPGESSTH HMDQLKGVVL QSKQPEKPTN QNGSPTRFSN  540
PTISMSPMGA SFQQQAGFTL IGPAEMEGIA QSSKKPRSGD MQNSPSSILS MDMDVKHGET  600
SREIGVNFGG DRLTKDGYPL ITGSNGSFGA YPMGDLGRFN IEQLTPRFSG NSVSLTLGLP  660
HCENLSLSGT QQNYLSSQNI QLGGRRIEIG TSEPDFSGIN TSQNSHSSSG FESVDIQNRK  720
RFPAQLLPDF VA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-16413471563Homeobox protein Meis2
3k2a_B1e-16413471563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G216600.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2323520.0CU232352.1 Populus EST from mild drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002299773.20.0BEL1-like homeodomain protein 1
RefseqXP_024442217.10.0BEL1-like homeodomain protein 1
RefseqXP_024442222.10.0BEL1-like homeodomain protein 1
RefseqXP_024442227.10.0BEL1-like homeodomain protein 1
TrEMBLB9GHM60.0B9GHM6_POPTR; Uncharacterized protein
STRINGPOPTR_0001s22430.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-122BEL1-like homeodomain 1