PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.001G214700.6

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

YABBY

Protein Properties

Length: 143aa MW: 15902.9 Da PI: 9.889

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.001G214700.6	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	144.3	1.3e-44	22	109	83	170
YABBY 83 ksnvekeesastsvssekl.senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +s + +++ s+s+ ++ se++++e pr+ p+irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl Potri.001G214700.6 22 NSEDLNKNFGSSSKCNKVTaSESTEHEPPRM-PAIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 109 5555555555555544444267777777775.56*****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.4E-42	3	109	IPR006780	YABBY protein
SuperFamily	SSF47095	9.29E-9	51	102	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.4E-5	57	103	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development
GO:0010158	Biological Process	abaxial cell fate specification

Sequence ? help Back to Top
Protein Sequence Length: 143 aa Download sequence Send to blast
MGASLQTLPL QDPQSQKLLL INSEDLNKNF GSSSKCNKVT ASESTEHEPP RMPAIRPPEK 60 RQRVPSAYNR FIKEEIQRIK ASNPDISHRE AFSTAAKNWA HFPHIHFGLK LDSNKHAKLD 120 HQSFAGEGTQ KTSGLYEING SL*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.263	0.0	bud\| catkin\| leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in subepidermal cells of anlagen regions, then in abaxial part of primordia and finally in differentiating organs. Levels decrease in differentiated organs. In embryo, expressed from the heart stage in the abaxial domain of the cotyledon primordia and decrease as the embryo matures. In stamen, expression restricted to the abaxial region differentiating into the connective. In gynoecium, expressed in the abaxial cell layers differentiating into the valves. {ECO:0000269\|PubMed:10457020}.
Uniprot	TISSUE SPECIFICITY: Expressed at low levels in abaxial regions of lateral aerial organ primordia leading to cotyledons, leaves, flower meristems, sepals, petals, stamen and carpels, but not in roots. {ECO:0000269\|PubMed:10457020}.

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.001G214700.6

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF147402	0.0	EF147402.1 Populus trichocarpa clone WS01230_J05 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024453762.1	1e-103	axial regulator YABBY 5 isoform X3
Swissprot	Q9XFB0	7e-47	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A9PGB2	1e-101	A9PGB2_POPTR; Uncharacterized protein
STRING	POPTR_0001s22180.1	2e-98	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	3e-49	YABBY family protein

Link Out ? help Back to Top
Phytozome	Potri.001G214700.6

Publications ? help Back to Top
Ralph SG, et al. Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding. BMC Genomics, 2008. 9: p. 57 [PMID:18230180] Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]