PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G206900.1
Common NamePOPTR_0001s21440g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 193aa    MW: 22014.7 Da    PI: 4.9172
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G206900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM91.51.4e-2861301128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWk. 84 
                         lppGfrF P+deelvv++L++k++  +++  +vi+++++y ++Pw+L+       k+ +e k+ yf+s+r +        n++t++g Wk 
  Potri.001G206900.1   6 LPPGFRFCPSDEELVVHFLHRKAALLPCHP-DVIPDLGLYPYDPWQLDGtysilsKALSEGKQRYFYSRRTQ--------NKITSNGCWKp 87 
                         79*************************999.99**************84467766555578899***99854........77999*****6 PP

                 NAM  85 atgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           g+ +e++ +  ++++vg+kk + fy   + +g++t+Wvm+eyrl
  Potri.001G206900.1  88 MAGRGEELVLAsdSNKTVGTKKYFLFY---TADGVRTNWVMEEYRL 130
                         55666666555468889**********...78899*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.49E-382159IPR003441NAC domain
PROSITE profilePS5100536.4136160IPR003441NAC domain
PfamPF023653.5E-207130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MGSVNLPPGF RFCPSDEELV VHFLHRKAAL LPCHPDVIPD LGLYPYDPWQ LDGTYSILSK  60
ALSEGKQRYF YSRRTQNKIT SNGCWKPMAG RGEELVLASD SNKTVGTKKY FLFYTADGVR  120
TNWVMEEYRL SGFDTSASTK TRNRQKQDYS KWVICRVYER DLDEDDSGTD QLSCLDEVFL  180
SLDDLDEISL PN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-24116112166NO APICAL MERISTEM PROTEIN
1ut4_B1e-24116112166NO APICAL MERISTEM PROTEIN
1ut7_A1e-24116112166NO APICAL MERISTEM PROTEIN
1ut7_B1e-24116112166NO APICAL MERISTEM PROTEIN
3swm_A1e-24116115169NAC domain-containing protein 19
3swm_B1e-24116115169NAC domain-containing protein 19
3swm_C1e-24116115169NAC domain-containing protein 19
3swm_D1e-24116115169NAC domain-containing protein 19
3swp_A1e-24116115169NAC domain-containing protein 19
3swp_B1e-24116115169NAC domain-containing protein 19
3swp_C1e-24116115169NAC domain-containing protein 19
3swp_D1e-24116115169NAC domain-containing protein 19
4dul_A1e-24116112166NAC domain-containing protein 19
4dul_B1e-24116112166NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.155604e-54leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in root xylem vessels (PubMed:15923329). Expressed in stems, vascular tissue of cauline leaves and tracheary elements of sepals (PubMed:18069942). {ECO:0000269|PubMed:15923329, ECO:0000269|PubMed:18069942}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G206900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB9707962e-46AB970796.1 Populus tremula x Populus tremuloides PtxtNAC161 mRNA for NAC transcriptional factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024436961.11e-136NAC domain-containing protein 104
SwissprotQ8GWK69e-71NC104_ARATH; NAC domain-containing protein 104
TrEMBLB9GF871e-134B9GF87_POPTR; Uncharacterized protein
STRINGPOPTR_0001s21440.11e-142(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17363395
Representative plantOGRP45101024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.14e-73xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]