PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G187500.1
Common NamePOPTR_0001s18800g, TINYL1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 234aa    MW: 25474.5 Da    PI: 5.1548
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G187500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.53.2e-1854103255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GVr++  +g+Wv+eIr p++   + r++lg+f t+e+Aa+a++ a+++++g
  Potri.001G187500.1  54 VYRGVRRRA-WGKWVSEIRQPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 103
                         69****777.**********843...6**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.2E-3154112IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-2154112IPR016177DNA-binding domain
PROSITE profilePS5103223.82854111IPR001471AP2/ERF domain
SMARTSM003805.8E-3654117IPR001471AP2/ERF domain
PfamPF008472.9E-1354103IPR001471AP2/ERF domain
PRINTSPR003671.8E-105566IPR001471AP2/ERF domain
CDDcd000188.53E-3355113No hitNo description
PRINTSPR003671.8E-107793IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MTKEESSNRS CSSICTTSSS SSSSFATTIT NKLKKQNPVD QKSRKARDCS KHAVYRGVRR  60
RAWGKWVSEI RQPRKKSRIW LGTFPTPEMA ARAHDVAALS IKGDSAILNF PELAASLPRP  120
VSLMPRDIQA AAAKAAAMVD FNSSSPPSSL SSSSVSVSED VAESEEEYLS EIVELPNIEG  180
SFDSPDQSQT EFMLFDSVDR WVYPPLDLSG EFCDQLLGLE SLIPSNFGGS ELN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-2039112173Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G187500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1514610.0EF151461.1 Populus trichocarpa TINY-like protein 1 (TINYL1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002298236.11e-170ethylene-responsive transcription factor TINY
SwissprotQ9LYD38e-61DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA9PL481e-168A9PL48_POPTR; ERF family protein
STRINGPOPTR_0001s18800.11e-169(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.15e-49ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]