PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.001G146200.13 | ||||||||
Common Name | POPTR_0001s02910g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ARR-B | ||||||||
Protein Properties | Length: 538aa MW: 59985.8 Da PI: 6.4331 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 82 | 6.6e-26 | 295 | 350 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ.kYRla 56 k +++WtpeLH++Fv+ave+L G ++A+P++ile+mkv+gLt+++v+SHLQ kYR++ Potri.001G146200.13 295 KMKVDWTPELHRKFVQAVEKL-GVDQAIPSRILEVMKVEGLTRHNVASHLQqKYRMH 350 5689*****************.****************************549**86 PP | |||||||
2 | Response_reg | 30.3 | 2.1e-11 | 20 | 126 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 vl+ d++ + +++ le +y +v ++ + +eal + ++ +++ ++ ++m+++ ++ +k +++++ +lp i+ ++ + +++ + Potri.001G146200.13 20 VLLLDEDSMSAAEIKSKLEAMDY-IVYTFCNETEALSAISNEPgsFHVAIVEVSMSNS--SRSFKFLETSK-DLPTIMTSSIDCLNTMMK 105 79999999999************.***************999989**********984..35555565555.899**9999999****** PP HHHTTESEEEESS--HHHHHH CS Response_reg 89 alkaGakdflsKpfdpeelvk 109 ++ +Ga +fl Kp ++++l++ Potri.001G146200.13 106 CIALGAVEFLRKPLSEDKLRN 126 ******************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.2300 | 1.4E-16 | 16 | 159 | No hit | No description |
SuperFamily | SSF52172 | 2.85E-16 | 16 | 134 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 6.1E-4 | 18 | 128 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 24.583 | 19 | 132 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 1.4E-8 | 20 | 127 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 7.57E-10 | 21 | 131 | No hit | No description |
PROSITE profile | PS51294 | 13.154 | 292 | 351 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.5E-25 | 293 | 353 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.97E-16 | 294 | 352 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.3E-23 | 295 | 350 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.8E-7 | 298 | 345 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 538 aa Download sequence Send to blast |
MVCTTNDLSA WKDFPKGLRV LLLDEDSMSA AEIKSKLEAM DYIVYTFCNE TEALSAISNE 60 PGSFHVAIVE VSMSNSSRSF KFLETSKDLP TIMTSSIDCL NTMMKCIALG AVEFLRKPLS 120 EDKLRNIWQH VVHKAFNAGG SVQSKSLKPV KDSVVSMLEL KDGLEENENK NMEKTENYPA 180 PSTPQLKQGE RLLDDGDCQD HINCLIEKES VEQEGDSKSV ETTCAMSEET LQAGDPQSFT 240 ETVIKEEDDS TDGVKSENNM CPNSQNKDTL NHSNGCAEKA SSLHNSHGTR ANRKKMKVDW 300 TPELHRKFVQ AVEKLGVDQA IPSRILEVMK VEGLTRHNVA SHLQQKYRMH RRHILPKEDE 360 RQWTQHRDQV QRSYYPHKPI MAYPPYHSNH ALPPGPVYPM WGATGSHTAG VHMWGPPGYS 420 PWPPTESCHW KPYPGMHADA WGCPVMPPHN PYSTIPHYAS GFQSASMVNN SCGMPQKLFD 480 LQPAEEVIDK VVKEAINKPW LPLPLGLKPP SADSVLAELS RQGVSSIPPR INGSNSF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 3e-14 | 300 | 350 | 6 | 55 | Transcription factor LUX |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.8470 | 0.0 | bud |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.001G146200.13 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT028920 | 0.0 | CT028920.1 Poplar cDNA sequences. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006368445.2 | 0.0 | two-component response regulator-like APRR2 isoform X1 | ||||
Refseq | XP_024440369.1 | 0.0 | two-component response regulator-like APRR2 isoform X1 | ||||
Refseq | XP_024440375.1 | 0.0 | two-component response regulator-like APRR2 isoform X1 | ||||
Refseq | XP_024440380.1 | 0.0 | two-component response regulator-like APRR2 isoform X1 | ||||
Refseq | XP_024440382.1 | 0.0 | two-component response regulator-like APRR2 isoform X1 | ||||
Swissprot | Q6LA43 | 1e-151 | APRR2_ARATH; Two-component response regulator-like APRR2 | ||||
TrEMBL | A0A2K2BXM6 | 0.0 | A0A2K2BXM6_POPTR; ARR-B family protein | ||||
STRING | POPTR_0001s02910.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18020.6 | 1e-153 | ARR-B family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.001G146200.13 |
Entrez Gene | 18094205 |
Publications ? help Back to Top | |||
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