PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G146200.11
Common NamePOPTR_0001s02910g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ARR-B
Protein Properties Length: 538aa    MW: 59985.8 Da    PI: 6.4331
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G146200.11genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like826.6e-26295350156
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ.kYRla 56 
                          k +++WtpeLH++Fv+ave+L G ++A+P++ile+mkv+gLt+++v+SHLQ kYR++
  Potri.001G146200.11 295 KMKVDWTPELHRKFVQAVEKL-GVDQAIPSRILEVMKVEGLTRHNVASHLQqKYRMH 350
                          5689*****************.****************************549**86 PP
2Response_reg30.32.1e-11201261109
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 
                          vl+ d++   +  +++ le  +y +v ++ + +eal  + ++   +++ ++ ++m+++  ++ +k +++++ +lp i+ ++ +  +++ +
  Potri.001G146200.11  20 VLLLDEDSMSAAEIKSKLEAMDY-IVYTFCNETEALSAISNEPgsFHVAIVEVSMSNS--SRSFKFLETSK-DLPTIMTSSIDCLNTMMK 105
                          79999999999************.***************999989**********984..35555565555.899**9999999****** PP

                          HHHTTESEEEESS--HHHHHH CS
         Response_reg  89 alkaGakdflsKpfdpeelvk 109
                          ++ +Ga +fl Kp ++++l++
  Potri.001G146200.11 106 CIALGAVEFLRKPLSEDKLRN 126
                          ******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.4E-1616159No hitNo description
SuperFamilySSF521722.85E-1616134IPR011006CheY-like superfamily
SMARTSM004486.1E-418128IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011024.58319132IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.4E-820127IPR001789Signal transduction response regulator, receiver domain
CDDcd001567.57E-1021131No hitNo description
PROSITE profilePS5129413.154292351IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.5E-25293353IPR009057Homeodomain-like
SuperFamilySSF466895.97E-16294352IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-23295350IPR006447Myb domain, plants
PfamPF002497.8E-7298345IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MVCTTNDLSA WKDFPKGLRV LLLDEDSMSA AEIKSKLEAM DYIVYTFCNE TEALSAISNE  60
PGSFHVAIVE VSMSNSSRSF KFLETSKDLP TIMTSSIDCL NTMMKCIALG AVEFLRKPLS  120
EDKLRNIWQH VVHKAFNAGG SVQSKSLKPV KDSVVSMLEL KDGLEENENK NMEKTENYPA  180
PSTPQLKQGE RLLDDGDCQD HINCLIEKES VEQEGDSKSV ETTCAMSEET LQAGDPQSFT  240
ETVIKEEDDS TDGVKSENNM CPNSQNKDTL NHSNGCAEKA SSLHNSHGTR ANRKKMKVDW  300
TPELHRKFVQ AVEKLGVDQA IPSRILEVMK VEGLTRHNVA SHLQQKYRMH RRHILPKEDE  360
RQWTQHRDQV QRSYYPHKPI MAYPPYHSNH ALPPGPVYPM WGATGSHTAG VHMWGPPGYS  420
PWPPTESCHW KPYPGMHADA WGCPVMPPHN PYSTIPHYAS GFQSASMVNN SCGMPQKLFD  480
LQPAEEVIDK VVKEAINKPW LPLPLGLKPP SADSVLAELS RQGVSSIPPR INGSNSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A3e-14300350655Transcription factor LUX
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.84700.0bud
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G146200.11
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0289200.0CT028920.1 Poplar cDNA sequences.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006368445.20.0two-component response regulator-like APRR2 isoform X1
RefseqXP_024440369.10.0two-component response regulator-like APRR2 isoform X1
RefseqXP_024440375.10.0two-component response regulator-like APRR2 isoform X1
RefseqXP_024440380.10.0two-component response regulator-like APRR2 isoform X1
RefseqXP_024440382.10.0two-component response regulator-like APRR2 isoform X1
SwissprotQ6LA431e-151APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLA0A2K2BXM60.0A0A2K2BXM6_POPTR; ARR-B family protein
STRINGPOPTR_0001s02910.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-153ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]