PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G142900.1
Common NamePALM1, POPTR_0001s02530g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 246aa    MW: 27273.2 Da    PI: 5.8161
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G142900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.000127496123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C+ C + F++   L  H+++H
  Potri.001G142900.1 74 YTCTFCRREFRSAQALGGHMNVH 96
                        9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.79E-671101No hitNo description
PROSITE profilePS5015711.15774101IPR007087Zinc finger, C2H2
SMARTSM003550.00667496IPR015880Zinc finger, C2H2-like
PfamPF139121.9E-57497IPR007087Zinc finger, C2H2
PROSITE patternPS0002807696IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MAAEIGLLSL TQLQKLPQSQ QNQYQLHQLN PNETPSVWMW NPKQTQEEDD SWEVRAFAED  60
TGNINGTTWP PRSYTCTFCR REFRSAQALG GHMNVHRRDR ARLHQTQPGS INPNSSTSSS  120
SSSTFIIPTQ EFPPNAGLCL LYQLPNPNGV FTPATMNACA TDSPSTLLSI TPYPHNNLIE  180
KSLNFLVAPP EINTSHCYSI KAEPSASIDN SNNINSDNNF KELAHEELDL ELRLGHRSTT  240
PPPSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-136996229superman protein
2l1o_A2e-136996229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G142900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM4533380.0HM453338.1 Populus trichocarpa palmate-like pentafoliata 1 transcription factor (PALM1) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006368408.10.0transcriptional regulator SUPERMAN
TrEMBLB9MU160.0B9MU16_POPTR; Palmate-like pentafoliata 1 transcription factor
STRINGPOPTR_0001s02530.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35253155
Representative plantOGRP5761581
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.15e-41C2H2 family protein