PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G140800.1
Common NamePOPTR_0001s02330g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 378aa    MW: 40021.9 Da    PI: 6.9705
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G140800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.93.7e-0891116127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +kt+lC+ f++ GtC+y  +C+FaH++
  Potri.001G140800.1  91 FKTKLCCKFRA-GTCPYITNCNFAHSM 116
                         69*********.*************95 PP
2zf-CCCH18.53.6e-06163188126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         yk + C+ f+    C+yGd+C+F H+
  Potri.001G140800.1 163 YKGRHCKKFYTEEGCPYGDNCTFLHD 188
                         77888********************7 PP
3zf-CCCH42.98e-14257282126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         +kt++C+ +  tG+C++G++C+FaHg
  Potri.001G140800.1 257 WKTRICNKWELTGYCPFGNKCHFAHG 282
                         8************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.24E-788121IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-1388123IPR000571Zinc finger, CCCH-type
SMARTSM003560.001590116IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.62490117IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-591115IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-9160190IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.27E-7161190IPR000571Zinc finger, CCCH-type
SMARTSM003560.058162189IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.23162190IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-17252286IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-10253287IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-9256283IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.981256284IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-11257282IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0061158Biological Process3'-UTR-mediated mRNA destabilization
GO:0005829Cellular Componentcytosol
GO:0003730Molecular FunctionmRNA 3'-UTR binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MDYNRDFSGV NVIPITGPDS WISNSSDSNS VWATEDDYRF WNNSDGLNDN TPSNSNYQSS  60
ETLSGSEPPN KKSKNNSQEL NSKKSIGKMF FKTKLCCKFR AGTCPYITNC NFAHSMEELR  120
RPPPNWQEIV AAHEEERGNT VDAREEFQIP SIVGFGAETQ RSYKGRHCKK FYTEEGCPYG  180
DNCTFLHDEQ SKNRESVAIS LGPGGYGGGG GGGGGGGGGG GGGGGGGGGG GGGGGGGGGG  240
GGGNAGSNAV NVKPSNWKTR ICNKWELTGY CPFGNKCHFA HGVGELHRYG GGLVEMDAKD  300
SAFVPVESKQ GGVPSKTPPE TVVASVTSVP NSDVYHLGVP SQKSSILIQR PGQRTHQKWK  360
GPDKISRIYG DWIDDIE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.61140.0stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G140800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006368387.10.0zinc finger CCCH domain-containing protein 12
SwissprotQ84UQ31e-125C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLU5GRB70.0U5GRB7_POPTR; Uncharacterized protein
STRINGPOPTR_0001s02330.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77513342
Representative plantOGRP20451737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-122C3H family protein