PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G136000.2
Common NamePOPTR_0001s01840g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bZIP
Protein Properties Length: 402aa    MW: 42396.5 Da    PI: 6.5247
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G136000.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_170.92e-22304366163
                         XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                         e+elkr+rrkq+NRe+ArrsR+RK+ae++eL++++++L++eN  L++e++++k e+++l +e+
  Potri.001G136000.2 304 ERELKRQRRKQSNRESARRSRLRKQAECDELAQRAEALKEENANLRSEVNQIKSEYEQLLAEN 366
                         89*********************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.8E-27396IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.1E-57135271No hitNo description
Gene3DG3DSA:1.20.5.1701.3E-17297362No hitNo description
PfamPF001701.8E-20304366IPR004827Basic-leucine zipper domain
SMARTSM003382.2E-21304368IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.38306369IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.5E-11307363No hitNo description
CDDcd147027.46E-24309359No hitNo description
PROSITE patternPS000360311326IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MVSSDMDKTG KEKEAKPPSA APTQEQPSTA SATTVNPDWS GFQAYSPIPP PGFLASSPQA  60
HPYMWGVQHI MPPYGTPPHP YVAMYPHGVY AHPSIPPGSY PFSPFAMPSP NGIAEASGNT  120
PGSMEADGRP SDAKEKLPIK RSKGSLGSLN MITGKNNEHG KTTGVSANGA YSKSAESGSE  180
GSSEGSDANS QSDSQMKSGG RQDSLEDSSQ NGGSAHGAQN GGQGASNTIM NQTMAVMPIS  240
AASAPGAIPG PTTNLNIGMD YWGAPASSTV PAIRGKVPST PVAGGVVSTG SRDGVQSQIW  300
LQDERELKRQ RRKQSNRESA RRSRLRKQAE CDELAQRAEA LKEENANLRS EVNQIKSEYE  360
QLLAENASLK ERLGEVSGQE DFRAGRNDQH MSNDTQQTGQ T*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1320326RRSRLRK
2320327RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G136000.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002297692.30.0bZIP transcription factor 16 isoform X1
RefseqXP_024438024.10.0bZIP transcription factor 16 isoform X1
SwissprotQ501B21e-171BZP16_ARATH; bZIP transcription factor 16
TrEMBLA0A2K2BX380.0A0A2K2BX38_POPTR; Uncharacterized protein
STRINGPOPTR_0001s01840.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-151basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]