PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.001G132600.1 | ||||||||
Common Name | POPTR_0001s01480g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | GRF | ||||||||
Protein Properties | Length: 343aa MW: 38231.7 Da PI: 8.8742 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 72.4 | 5.1e-23 | 79 | 123 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++ +++k+CErH++r+r+rsrk++e+ Potri.001G132600.1 79 DSEPGRCRRTDGKKWRCSKDAHPDSKYCERHMNRSRNRSRKPVES 123 689***************************************986 PP | |||||||
2 | QLQ | 50.9 | 4.9e-18 | 19 | 53 | 3 | 37 |
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 FT aQ+++L++Q+l++KyL a++ vPp+Ll++i+k Potri.001G132600.1 19 FTVAQWHELEHQALIFKYLKAGLSVPPYLLLPIRK 53 9********************************86 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 4.9E-10 | 17 | 53 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.265 | 18 | 53 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 2.9E-13 | 19 | 52 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.45 | 79 | 123 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.1E-19 | 81 | 122 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 343 aa Download sequence Send to blast |
MSNSSVTVAA VGPRSQPGFT VAQWHELEHQ ALIFKYLKAG LSVPPYLLLP IRKSFQLLSP 60 GFLHPSNLSY CSYFGKKIDS EPGRCRRTDG KKWRCSKDAH PDSKYCERHM NRSRNRSRKP 120 VESQTTSQSM STVASEIVTG SSSSGSRAYT TMPLPTIGNS GPLGFGSNMS RWQMESMPYG 180 VNSKDYRSLH GLKLEADEKT FLPEALGNTR SFGMNSTVDS TWHLTSQVPA SPVPESRNDA 240 LLQNYPQLRT LQDFEPLTVD DAPSKQQEEQ YLFGREFSSS GSMRQENQSL QPLFDEWPKC 300 RDMDSYFTDQ RSNKSSSGVQ LSMAIPMAPN SAPRSYHSPN DA* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pth.8483 | 0.0 | bud |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.001G132600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024443968.1 | 0.0 | growth-regulating factor 4 | ||||
TrEMBL | U5GUE9 | 0.0 | U5GUE9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s01480.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4781 | 29 | 51 | Representative plant | OGRP460 | 16 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37740.1 | 4e-39 | growth-regulating factor 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.001G132600.1 |
Entrez Gene | 18094082 |