PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G121300.1
Common NamePOPTR_0001s00350g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 315aa    MW: 35189.9 Da    PI: 9.8813
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G121300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.91.6e-31244302360
                         -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 
                         D + WrKYGqK++kgs++prsYY+C+s+ gCp++k+vers edp+++++tYegeHnh+k
  Potri.001G121300.1 244 DDHYWRKYGQKPIKGSPYPRSYYKCSSTrGCPARKHVERSLEDPTMLVVTYEGEHNHSK 302
                         8899**********************999****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.3E-14200240IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.8E-32230302IPR003657WRKY domain
PROSITE profilePS5081130.377237303IPR003657WRKY domain
SuperFamilySSF1182906.54E-27239301IPR003657WRKY domain
SMARTSM007744.8E-37242302IPR003657WRKY domain
PfamPF031069.0E-27244300IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MKEASGVCVS MRPRQDFRVL EVAQSSFRQA HHLFSCISDQ NQKRSIQEVS LIAQDTVNEF  60
RNLVRLLDGS EQSGCKRIRK GPLPHSHDIN PVELMDSPNS VSKSPHHNFS QPNRQLFPLQ  120
SIQSTTSLIH ANSIDLYREK QKTKDNVDVK TNLILGFNLS LLQPSTSFSS LDGGGRIIHH  180
STSEILPSQD DASISSKSKS GAKSEEKCLA STGGCHCSKR RKLRIKKVIK VPASSTKPAD  240
IPPDDHYWRK YGQKPIKGSP YPRSYYKCSS TRGCPARKHV ERSLEDPTML VVTYEGEHNH  300
SKIQSPNPDI MLHI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-212353001074Probable WRKY transcription factor 4
2ayd_A5e-212403001271WRKY transcription factor 1
2lex_A5e-212353001074Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G121300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3774420.0GQ377442.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002297623.30.0probable WRKY transcription factor 17 isoform X1
TrEMBLA0A2K2BWE50.0A0A2K2BWE5_POPTR; Uncharacterized protein
STRINGPOPTR_0001s00350.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF144241318
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.13e-42WRKY DNA-binding protein 11