PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.001G114000.1 | ||||||||
Common Name | POPTR_0001s08310g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | GRF | ||||||||
Protein Properties | Length: 203aa MW: 22447.8 Da PI: 10.5661 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 77.3 | 1.6e-24 | 137 | 180 | 2 | 45 |
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 epgrCrRtDGKkWRCs++vl+++k+C+rH+hrgr+rsrk +e+ Potri.001G114000.1 137 HEPGRCRRTDGKKWRCSKEVLPDQKYCDRHIHRGRQRSRKLVEA 180 69**************************************9985 PP | |||||||
2 | QLQ | 40.6 | 7.8e-15 | 65 | 99 | 3 | 37 |
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 FT Ql++L+ Q l+yKy+ a+ PvP +L+++i+k Potri.001G114000.1 65 FTILQLHELELQSLIYKYIQAGFPVPYHLVLPIWK 99 7888******************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.4E-4 | 63 | 99 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 19.234 | 64 | 99 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 2.4E-11 | 65 | 98 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.189 | 136 | 180 | IPR014977 | WRC domain |
Pfam | PF08879 | 5.8E-21 | 138 | 179 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MKSQAPPSKI ARLSNSRTGL LNGWNMEGNR RNGRSRSPSI GLGVELGRGG SSQRPITGCK 60 KPYGFTILQL HELELQSLIY KYIQAGFPVP YHLVLPIWKS VTASLGGLSS SLYQLYPSFM 120 GCKCNPLYLE YKKGMEHEPG RCRRTDGKKW RCSKEVLPDQ KYCDRHIHRG RQRSRKLVEA 180 ASHSNASTNL SISLPGIGSA SA* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.6517 | 0.0 | bud |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.001G114000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002298083.2 | 1e-147 | growth-regulating factor 10 | ||||
Swissprot | Q6AWX7 | 2e-41 | GRF12_ORYSJ; Growth-regulating factor 12 | ||||
TrEMBL | B9GKS4 | 1e-146 | B9GKS4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s08310.1 | 1e-147 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14195 | 10 | 17 | Representative plant | OGRP460 | 16 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37740.1 | 1e-32 | growth-regulating factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Potri.001G114000.1 |
Entrez Gene | 7490935 |
Publications ? help Back to Top | |||
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