PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.001G079900.1 | ||||||||
Common Name | POPTR_0001s11770g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 263aa MW: 28931.7 Da PI: 7.6125 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.6 | 1.3e-17 | 132 | 182 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++Ae rdp +ng +r++lg++ ta+eAa a+++a+ +++g Potri.001G079900.1 132 HYRGVRQRP-WGKFAAETRDPAKNG--ARVWLGTYETAKEAALAYDRAAYRMRG 182 7********.**********99987..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.7E-30 | 131 | 191 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-13 | 132 | 182 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.261 | 132 | 190 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.8E-34 | 132 | 196 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.24E-29 | 132 | 191 | No hit | No description |
SuperFamily | SSF54171 | 5.89E-22 | 132 | 192 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.8E-13 | 133 | 144 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-13 | 172 | 192 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MNEISSLCEF SALSHHHQHR STSFNSLISC LNETWGDLPL RVDDSEDMVI YNFLRDAVCC 60 GWSPLDLSTS TTTTSSTTTT TTTTTTTITT NVVKAEPKDE LDLEAEPIKL VQESSLNMEA 120 VVTKKVVTKG RHYRGVRQRP WGKFAAETRD PAKNGARVWL GTYETAKEAA LAYDRAAYRM 180 RGSKALLNFP HKIGSNEPDP VRITAKRRQP DTGLTAVDTG SAKMRKMLVD EGAELERGVG 240 YSVFQVGHHK GLMPVGEQLL AS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-37 | 129 | 197 | 2 | 70 | ATERF1 |
3gcc_A | 1e-37 | 129 | 197 | 2 | 70 | ATERF1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots and at low levels in buds and leaves. Not expressed in cell culture. {ECO:0000269|PubMed:7756828}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.001G079900.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by ethephon (ethylene-releasing compound) in buds and to a lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by both protein kinases and protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU228918 | 0.0 | CU228918.1 Populus EST from severe drought-stressed leaves. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002297926.1 | 0.0 | ethylene-responsive transcription factor 2 | ||||
Swissprot | Q40479 | 3e-89 | ERF2_TOBAC; Ethylene-responsive transcription factor 2 | ||||
TrEMBL | B9GK35 | 0.0 | B9GK35_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s11770.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2239 | 33 | 82 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17500.1 | 1e-59 | ethylene responsive element binding factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Potri.001G079900.1 |
Entrez Gene | 7491490 |
Publications ? help Back to Top | |||
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