PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.001G063000.3 | ||||||||
Common Name | POPTR_0011s05320g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | bHLH | ||||||||
Protein Properties | Length: 161aa MW: 18043.3 Da PI: 6.5226 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.9 | 3.2e-12 | 9 | 61 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksLq 55 r+ + +Er+RR++++ +++L +l+P+ + + + ls + L +A YIk Lq Potri.001G063000.3 9 RTDRKTIERNRRNQMKALYSQLNSLVPHqS---SREPvLSLPDQLDEAASYIKRLQ 61 778899**********************54...55566*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.75E-12 | 5 | 87 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.45E-6 | 5 | 65 | No hit | No description |
PROSITE profile | PS50888 | 11.528 | 7 | 60 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.8E-8 | 9 | 61 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.0E-12 | 9 | 79 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0098 | 13 | 66 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MENNPSSSRT DRKTIERNRR NQMKALYSQL NSLVPHQSSR EPVLSLPDQL DEAASYIKRL 60 QTNLERMKEK KDNLMGTERT NYASMSSCNG TTTGLRSPQI EVRETGSTLE VVLITGLDGQ 120 FMFNETIRVL HEEGAEIINA SFSVVEDTVF HTIHSKVVVA * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.001G063000.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024436873.1 | 1e-114 | transcription factor bHLH162 isoform X2 | ||||
Swissprot | F4JIJ7 | 7e-49 | BH162_ARATH; Transcription factor bHLH162 | ||||
TrEMBL | A0A3N7E7Q0 | 1e-114 | A0A3N7E7Q0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0011s05320.1 | 1e-111 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 3e-51 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.001G063000.3 |
Entrez Gene | 18103032 |
Publications ? help Back to Top | |||
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