PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.001G044500.3

Common Name

POPTR_0001s03620g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

WRKY

Protein Properties

Length: 206aa MW: 23220.3 Da PI: 9.5611

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.001G044500.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	61.8	1.2e-19	163	202	1	39
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEE CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkve 39 ++Dgy+WrKYGqK+ ++++ pr+Y++C++a +Cpvkkkv Potri.001G044500.3 163 VKDGYQWRKYGQKVTRDNPSPRAYFKCSFApSCPVKKKVR 202 58*************************99*****96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.5E-18	154	202	IPR003657	WRKY domain
PROSITE profile	PS50811	17.511	158	205	IPR003657	WRKY domain
SuperFamily	SSF118290	2.35E-16	160	203	IPR003657	WRKY domain
SMART	SM00774	5.4E-9	163	205	IPR003657	WRKY domain
Pfam	PF03106	4.3E-15	164	202	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0002237	Biological Process	response to molecule of bacterial origin
GO:0009611	Biological Process	response to wounding
GO:0009751	Biological Process	response to salicylic acid
GO:0010200	Biological Process	response to chitin
GO:0042742	Biological Process	defense response to bacterium
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0050691	Biological Process	regulation of defense response to virus by host
GO:0050832	Biological Process	defense response to fungus
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MDNSSWVDTS LDLNINPLRV KSDAPVDAES FGVPRKMKPT FMFQTKPSAK EETGAIEEEL 60 NRVSEENRKL TEMLTVMCEN YNALRNQLMD CMCKNGEKEL HGPSKKRKSA SNNNNDNNIA 120 MNGNSESSST DEELSKKPRE EVIKAKTSRA YVKTEAGDKS LIVKDGYQWR KYGQKVTRDN 180 PSPRAYFKCS FAPSCPVKKK VRLKP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	197	204	KKKVRLKP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250\|UniProtKB:Q9SUP6}.

Function -- GeneRIF ? help Back to Top
Overexpression of PtrWRKY40 in transgenic poplar conferred higher susceptibility to Dothiorella gregaria infection. This susceptibility was coupled with reduced expression of SA-associated genes and jasmonic acid-related gene JAZ8. [PMID: 26423133]

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00251	DAP	Transfer from AT1G80840	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.001G044500.3

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KR025520	0.0	KR025520.1 Populus trichocarpa WRKY40 transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006368511.1	1e-148	probable WRKY transcription factor 40
Swissprot	Q9SAH7	6e-60	WRK40_ARATH; Probable WRKY transcription factor 40
TrEMBL	B9N9Y4	1e-147	B9N9Y4_POPTR; WRKY40 transcription factor
STRING	POPTR_0001s03620.1	1e-148	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80840.1	4e-60	WRKY DNA-binding protein 40

Link Out ? help Back to Top
Phytozome	Potri.001G044500.3
Entrez Gene	18094260

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang Y, et al. Regulation of oncogene expression in T-DNA-transformed host plant cells. PLoS Pathog., 2015. 11(1): p. e1004620 [PMID:25615824] Geilen K,Böhmer M Dynamic subnuclear relocalisation of WRKY40 in response to Abscisic acid in Arabidopsis thaliana. Sci Rep, 2015. 5: p. 13369 [PMID:26293691] Karim A, et al. Isolation and characterization of a subgroup IIa WRKY transcription factor PtrWRKY40 from Populus trichocarpa. Tree Physiol., 2015. 35(10): p. 1129-39 [PMID:26423133] Geilen K,Böhmer M Dynamic subnuclear relocalization of WRKY40, a potential new mechanism of ABA-dependent transcription factor regulation. Plant Signal Behav, 2015. 10(11): p. e1106659 [PMID:26479147] Van Aken O, et al. Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases. Plant Physiol., 2016. 171(3): p. 2150-65 [PMID:27208304] Carrió-Seguí À,Romero P,Sanz A,Peñarrubia L Interaction Between ABA Signaling and Copper Homeostasis in Arabidopsis thaliana. Plant Cell Physiol., 2016. 57(7): p. 1568-1582 [PMID:27328696] Lu K, et al. Overexpression of an Arabidopsis cysteine-rich receptor-like protein kinase, CRK5, enhances abscisic acid sensitivity and confers drought tolerance. J. Exp. Bot., 2016. 67(17): p. 5009-27 [PMID:27406784] Birkenbihl RP,Kracher B,Roccaro M,Somssich IE Induced Genome-Wide Binding of Three Arabidopsis WRKY Transcription Factors during Early MAMP-Triggered Immunity. Plant Cell, 2017. 29(1): p. 20-38 [PMID:28011690] Lee MH,Jeon HS,Kim HG,Park OK An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164. New Phytol., 2017. 214(1): p. 343-360 [PMID:28032643] Zhang S, et al. The Arabidopsis Mitochondrial Protease FtSH4 Is Involved in Leaf Senescence via Regulation of WRKY-Dependent Salicylic Acid Accumulation and Signaling. Plant Physiol., 2017. 173(4): p. 2294-2307 [PMID:28250067] Cheng P, et al. The ERA-Related GTPase AtERG2 Associated with Mitochondria 18S RNA Is Essential for Early Embryo Development in Arabidopsis. Front Plant Sci, 2018. 9: p. 182 [PMID:29497438]