PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.001G044500.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | WRKY | ||||||||
Protein Properties | Length: 253aa MW: 28705.3 Da PI: 9.1425 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.1 | 9.7e-30 | 163 | 222 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ ++++ pr+Y++C++a +Cpvkkkv+rs +d++v++ tYegeHnh+ Potri.001G044500.2 163 VKDGYQWRKYGQKVTRDNPSPRAYFKCSFApSCPVKKKVQRSIDDQSVLVATYEGEHNHP 222 58***************************99****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 7.5E-29 | 154 | 224 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 26.773 | 158 | 224 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-25 | 160 | 224 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.3E-33 | 163 | 223 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.3E-24 | 164 | 222 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0002237 | Biological Process | response to molecule of bacterial origin | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0050691 | Biological Process | regulation of defense response to virus by host | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MDNSSWVDTS LDLNINPLRV KSDAPVDAES FGVPRKMKPT FMFQTKPSAK EETGAIEEEL 60 NRVSEENRKL TEMLTVMCEN YNALRNQLMD CMCKNGEKEL HGPSKKRKSA SNNNNDNNIA 120 MNGNSESSST DEELSKKPRE EVIKAKTSRA YVKTEAGDKS LIVKDGYQWR KYGQKVTRDN 180 PSPRAYFKCS FAPSCPVKKK VQRSIDDQSV LVATYEGEHN HPHPSMEATS VQNQKLMHLK 240 SGNSWWNRWP LR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 6e-20 | 162 | 224 | 13 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250|UniProtKB:Q9SUP6}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00251 | DAP | Transfer from AT1G80840 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.001G044500.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KR025520 | 0.0 | KR025520.1 Populus trichocarpa WRKY40 transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006368511.1 | 1e-172 | probable WRKY transcription factor 40 | ||||
Swissprot | Q9SAH7 | 7e-78 | WRK40_ARATH; Probable WRKY transcription factor 40 | ||||
TrEMBL | B9N9Y4 | 1e-171 | B9N9Y4_POPTR; WRKY40 transcription factor | ||||
STRING | POPTR_0001s03620.1 | 1e-171 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 3e-78 | WRKY DNA-binding protein 40 |
Link Out ? help Back to Top | |
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Phytozome | Potri.001G044500.2 |