PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G035800.1
Common NamePOPTR_0001s07310g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 648aa    MW: 73689 Da    PI: 9.0898
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G035800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.48e-09461502240
                         SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                         ++W+ eE ell ++++++++g   +W+ I++++g+gR+ +++
  Potri.001G035800.1 461 KPWSREEIELLRKGIQKYPKGtsrRWEVISEYIGTGRSVEEI 502
                         69***********************************99876 PP
2Myb_DNA-binding28.73.1e-09590633344
                         SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 
                          W++  +  lv+a k ++++   +W+++a+ ++ g+t++qc+ ++
  Potri.001G035800.1 590 VWSAVQERALVQALKTFPKEisqRWERVAAAVP-GKTANQCRKKL 633
                         6********************************.********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1106.5E-2192197IPR001623DnaJ domain
SuperFamilySSF465652.62E-1994202IPR001623DnaJ domain
SMARTSM002715.8E-1395170IPR001623DnaJ domain
PfamPF002262.5E-1796175IPR001623DnaJ domain
PROSITE profilePS5007618.18296178IPR001623DnaJ domain
CDDcd062573.17E-1296167IPR001623DnaJ domain
PRINTSPR006253.9E-8101119IPR001623DnaJ domain
PRINTSPR006253.9E-8119134IPR001623DnaJ domain
PRINTSPR006253.9E-8150170IPR001623DnaJ domain
PROSITE patternPS006360155174IPR018253DnaJ domain, conserved site
Gene3DG3DSA:1.10.10.603.4E-6453502IPR009057Homeodomain-like
SuperFamilySSF466896.43E-8457503IPR009057Homeodomain-like
PROSITE profilePS512937.532458513IPR017884SANT domain
SMARTSM007179.2E-8459512IPR001005SANT/Myb domain
PfamPF002491.7E-7461502IPR001005SANT/Myb domain
CDDcd001677.39E-6462502No hitNo description
PROSITE profilePS512937.604586641IPR017884SANT domain
SMARTSM007172.1E-6587639IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.8E-6587632IPR009057Homeodomain-like
SuperFamilySSF466892.92E-8589644IPR009057Homeodomain-like
PfamPF002491.4E-7590633IPR001005SANT/Myb domain
CDDcd001675.95E-6591632No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
MAIQTSLQLI SYSQELVDGQ PVHVSSNCLP IKALKYEPAG HAYHSAALKL LGWEEEGTKS  60
EDQKVSKDKE QSYMPSSESY STKGKKKTGS GDKQQDHYAM LGLGHLRYLA TEEQIRKSYR  120
EVALKYHPDK QAAILLAEET EAAKQAKKNE IESHFKAIQE AYEALIDPVK RRIYDSTDEF  180
DDEIPTDCAP QDFFKVFGPA FMRNGRWSVN QPIPSLGDEN TSLKEVDSFY NFWYSFKSWR  240
EFPHADEFDL EQAESRDHKR WMERQNAKLS EKARKEDYAR IRTLVDSAYK RDPRILRRKE  300
EGKAEKQRRK EAKFLAKRLQ EEEAARAAEE ERRQKEEEGK RAAEAALQQK KLKEKEKKLL  360
RKERSRLRTL SAPVLPQCLL NLGEDDVENL CMSLDIEQLR SLCDRMEGKE VVEQAKVLRD  420
ACGCDHDSSS SKLGEKKISQ QNGSLKSNGR TPSSSSGKKE KPWSREEIEL LRKGIQKYPK  480
GTSRRWEVIS EYIGTGRSVE EILKATKTVL LQKPDTAKAF DSFLEKRKPA QSIASPLTTR  540
DEIQGASAMQ APESSVAKIA EEESSRDPDK QKTDDIVTAN GVSSSADQDV WSAVQERALV  600
QALKTFPKEI SQRWERVAAA VPGKTANQCR KKLALLKENF RNKKSTA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A1e-2119229520123Zuotin
5dje_B1e-2119229520123Zuotin
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.57020.0bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G035800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2227300.0CU222730.1 Populus EST from leave.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002299170.20.0dnaJ homolog subfamily C member 2
RefseqXP_024442936.10.0dnaJ homolog subfamily C member 2
TrEMBLA0A2K2BRW20.0A0A2K2BRW2_POPTR; Uncharacterized protein
STRINGPOPTR_0001s07310.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60833348
Representative plantOGRP38231521
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.10.0DnaJ domain ;Myb-like DNA-binding domain