PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G028400.1
Common NamePOPTR_0001s06580g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Trihelix
Protein Properties Length: 353aa    MW: 38717 Da    PI: 10.3611
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G028400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix491.6e-1557140186
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         +W++  v +L+ea+++++   +r+klk+++We+v++++      ++  ++++qCk+k+e+++kry+ + +++        s++p++ +l+
  Potri.001G028400.1  57 EWSEGAVSTLLEAYESKWILRNRAKLKGHDWEDVARHVssraNCTKSPKTQTQCKNKIESMKKRYRSESATADA------SSWPLYPRLD 140
                         5*************************************854444555566679***************999986......4699999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.8E-2055140No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MDKETNQECP SLRPNNSTTI KEESPRKIPR GLGAAGVIVT GTGGGGGGGG DRLKRDEWSE  60
GAVSTLLEAY ESKWILRNRA KLKGHDWEDV ARHVSSRANC TKSPKTQTQC KNKIESMKKR  120
YRSESATADA SSWPLYPRLD LLLRGNSATA AVISSPQHQQ PAIPASSNPP LILLVDPTLG  180
VPQPPPPSMT PPPPPPPSPP PQVIVIAQNS HGSNGVDRGQ KEDGVDTKLS NHVSDKNAME  240
VTDSSTPALY SDKKKTRSKK LKMRKERRKW GKREEWEIAD SIRWLAEVVV RSEQARMDTM  300
REVEKMRIEA EAKRGEMDLK RTEIIAKTQL EIAKLFAGGG KGVDSSLRIG RN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1252268KKKTRSKKLKMRKERRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G028400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2255730.0CU225573.1 Populus EST from leave.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002299199.20.0trihelix transcription factor ASIL1
TrEMBLB9GLZ40.0B9GLZ4_POPTR; Uncharacterized protein
STRINGPOPTR_0001s06580.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49943350
Representative plantOGRP44091421
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.11e-101sequence-specific DNA binding transcription factors