PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.001G026000.1

Common Name

POPTR_0001s06330g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Trihelix

Protein Properties

Length: 326aa MW: 36419.9 Da PI: 4.9445

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.001G026000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	49	1.6e-15	72	159	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspk...qCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +Li+a e+ +l+rg+lk+++W++v++ + +++ +++s+k qCk++++ ++k+yk +k+ + ++ + +s++p+fd l+ Potri.001G026000.1 72 CWSEGATAVLIDAWGERYLELSRGNLKQKHWKDVAEIVsSREDYSKSAKtdiQCKNRIDTVKKKYKLEKAKMASG--GGVSSWPFFDPLD 159 7***********************************867778877754449****************97..67779***997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	5.8E-25	70	161	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MDDDDDIQSH SNTTESSSPS PSPPDGRITV TVPATATVPP TPPPQQTDNS LALVLPMKSK 60 ANGSGGGGRE DCWSEGATAV LIDAWGERYL ELSRGNLKQK HWKDVAEIVS SREDYSKSAK 120 TDIQCKNRID TVKKKYKLEK AKMASGGGVS SWPFFDPLDR LIGSTARVPA VASGSKFPYH 180 FRRNQNMKAR IRKWGKDEDD DDDDEDEEEE EEEEEEEEEE EDGGWGNSIR MLTQAMLKFG 240 EAYEQAETAK LQQVVEMEKT RMKFAKELEL QRMQFFMQTQ MEISQLKNGR KGGSASGNHH 300 HHHHHHHTGN NITASNNVNN SDSDN*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269\|PubMed:21330492}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.001G026000.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024461013.1	1e-157	trihelix transcription factor ASIL2
Swissprot	Q9LJG8	4e-88	ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBL	A0A2C9UYM3	1e-122	A0A2C9UYM3_MANES; Uncharacterized protein
STRING	POPTR_0001s06330.1	1e-170	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7919	30	44
Representative plant	OGRP487	16	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14180.1	6e-56	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Potri.001G026000.1
Entrez Gene	7476853