PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.001G020200.1

Common Name

POPTR_0001s05750g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bZIP

Protein Properties

Length: 267aa MW: 29494.9 Da PI: 5.7434

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.001G020200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.7	3.4e-10	92	137	6	51
HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 6 rerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 + +r + NReA r++Rq+Kka ++ Lee+vk+L N++L ++++ Potri.001G020200.1 92 KVKRPAGNREAVRKYRQKKKAHTAYLEEEVKKLRISNQQLVRKIQQ 137 6689999*********************************999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.8E-13	84	153	No hit	No description
SMART	SM00338	3.9E-10	87	154	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.852	89	155	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	1.3E-13	90	137	IPR004827	Basic-leucine zipper domain
CDD	cd14686	4.85E-10	92	145	No hit	No description
SuperFamily	SSF57959	3.38E-8	92	138	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MKDYNMDDGE IELSDHVLLP NPDSSGSLQS SASVDSLLDE FLKNTRTCTH THTCNPLGPD 60 ITHTHTCYHT HTQVITSEED DDVNNREHSN SKVKRPAGNR EAVRKYRQKK KAHTAYLEEE 120 VKKLRISNQQ LVRKIQQQVI LEAEVLRLRS ILMGLRGKID TELGVLPFQN QGDATAAFKD 180 GNCGAQSTGG PMNLQCQTDL PCFHTQVVGS SSRVNIDGND KLMESWEGTC QPVILNSQAN 240 MDNMATTEGH AMDMVEALMS SASQVQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.001G020200.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002299223.2	0.0	basic leucine zipper 23
Refseq	XP_024458783.1	0.0	basic leucine zipper 23
TrEMBL	B9GM57	0.0	B9GM57_POPTR; Uncharacterized protein
STRING	POPTR_0001s05750.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2567	32	77
Representative plant	OGRP1970	15	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16770.1	3e-34	bZIP family protein

Link Out ? help Back to Top
Phytozome	Potri.001G020200.1
Entrez Gene	7496026