PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G019200.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Trihelix
Protein Properties Length: 460aa    MW: 51475.2 Da    PI: 5.5308
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G019200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix66.74.8e-21123219185
            trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstc 79 
                         +Wt++ v++Li+++  ++++   ++           +kk++W+ vsk m ++g+++sp+qC++k+++lnkryk+++e+ +++ t++++++ 
  Potri.001G019200.1 123 KWTDNVVRLLIAVVACVGDDGTLNAveglkrksgllQKKGKWKMVSKLMISKGCHVSPQQCEDKFNDLNKRYKRLNEILGRGtTCRVVENP 213
                         7**************666555543333555666888**********************************************779999999 PP

            trihelix  80 pyfdql 85 
                         ++ d++
  Potri.001G019200.1 214 VLMDSM 219
                         998888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.3E-18121246No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MDNSGLGGRF LSGPNSGLLD LESPIHRHQQ SQLGHPSLAH QHQVNLVGCF DNDHQPIGLS  60
EVKGTPSKVY SANFGKGKAV SPFNCASSGN ASEDDDQSFM EDGNGENSTG VKGKKGSPWQ  120
RMKWTDNVVR LLIAVVACVG DDGTLNAVEG LKRKSGLLQK KGKWKMVSKL MISKGCHVSP  180
QQCEDKFNDL NKRYKRLNEI LGRGTTCRVV ENPVLMDSMP HLSAKAKDDV RKILGSKHLF  240
YKEMCAYHNG QRIPNCQDLD LQGCSLPLER SSKDNNGSGE DEAEGNGDSD DGDDDDDESD  300
NEENNNADED GERVGQLCEG RVNDEHAHLW SQSGGRNGFD VEMAAIFQDP AVSPWERKEW  360
IKKQRLQLLE QRVSIQAQTF ELEKQRFKWL RYCSKKDKEF ERLRLENEWR KLENEQSALQ  420
LRQKQLEMDF RSSEPSFDPA CLGIDGVQGR DPIDLSRPQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G019200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2164130.0AC216413.1 Populus trichocarpa clone POP035-J17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024451426.10.0uncharacterized protein LOC7487031
TrEMBLA0A2K2BR190.0A0A2K2BR19_POPTR; Uncharacterized protein
STRINGPOPTR_0001s05670.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105463240
Representative plantOGRP27961329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.15e-65sequence-specific DNA binding transcription factors