PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pta011589 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
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Family | C2H2 | ||||||||
Protein Properties | Length: 190aa MW: 21500 Da PI: 8.0052 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.3 | 1.3e-05 | 125 | 143 | 3 | 21 |
ETTTTEEESSHHHHHHHHH CS zf-C2H2 3 CpdCgksFsrksnLkrHir 21 C++Cg+ F ++ +L rH+r Pta011589 125 CEYCGEEFFSWKTLIRHMR 143 ******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.88E-9 | 12 | 34 | No hit | No description |
SMART | SM00355 | 0.35 | 12 | 34 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.3E-4 | 12 | 35 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 1.7E-5 | 12 | 34 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.078 | 12 | 39 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 14 | 34 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.88E-9 | 118 | 145 | No hit | No description |
SMART | SM00355 | 0.019 | 123 | 145 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.764 | 123 | 150 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 9.0E-4 | 125 | 146 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 0.029 | 125 | 146 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 125 | 145 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MEEQECVQSF KHVCKVCKRR FACGRALGGH MRIHGSTVAA ASDFNEGSSE TGAKPALVPG 60 PVKQEQEASC GVDLQQQLTN GPVYDLRPKR KRNWSYADLE HSFDMPYEFG SKMLPSTSLK 120 NLQLCEYCGE EFFSWKTLIR HMRCHYNNST EGEEYGVSEG KEDVSNSESD SDSNPQRNKT 180 KGKRSKRPRH |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26610.1 | 5e-10 | C2H2-like zinc finger protein |