PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pta010325 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
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Family | bHLH | ||||||||
Protein Properties | Length: 235aa MW: 25626.9 Da PI: 8.2145 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.4 | 1.1e-12 | 165 | 210 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L++l+P+ +k + a++L +Av+YIk Lq Pta010325 165 SIAERVRRTRISEKMRNLQQLVPNM----DKQTNTADMLDEAVDYIKFLQ 210 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.097 | 159 | 209 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.09E-17 | 162 | 224 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.14E-12 | 163 | 214 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.7E-17 | 164 | 224 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-9 | 165 | 210 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.4E-14 | 165 | 215 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
RPGSQMNFMR QGSSTSGLSS QLSDMGLPPV DNLNMPVGSS ADSLGGSSSD DGSLSNGNGV 60 QRYMSSFRVG SWDDTVIVSE GFAGMQDGAA FSARKRVRDL NGKMMPALNL AESQKGEPSS 120 HVPMGLNHQF SLTKSPSEIA MEKLLQDSVP CKIRAKRGCA THPRSIAERV RRTRISEKMR 180 NLQQLVPNMD KQTNTADMLD EAVDYIKFLQ KQVQELSENE PKCNCSCKMN ASETT |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011625460.1 | 1e-74 | transcription factor bHLH130 | ||||
TrEMBL | Q9SQ79 | 2e-70 | Q9SQ79_PINTA; Helix-loop-helix protein 1A | ||||
STRING | XP_008776552.1 | 8e-65 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09180.1 | 2e-44 | bHLH family protein |