PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta010057

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

NAC

Protein Properties

Length: 244aa MW: 27681.9 Da PI: 8.8131

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Pinus_taeda-74027	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	180.6	4e-56	24	152	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 lppGfrFhPtdeelv++yL+kk+ +++++ ++i+e+d++k+ePwdLp k+k +ekewyfFs rd+ky+t r+nrat++gyWk+tgkd+e++++ +++l Pta010057 24 LPPGFRFHPTDEELVTYYLTKKILDSTFSG-RAIAEADLNKCEPWDLPGKAKMGEKEWYFFSLRDRKYPTRLRTNRATEAGYWKTTGKDREIFNSrSSAL 122 79************************99.89***********99999************************************9856778 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrle 129 vg+kktLvfykgrapkgekt+Wvmheyrle Pta010057 123 VGMKKTLVFYKGRAPKGEKTNWVMHEYRLE 152 **************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.35E-64	20	176	IPR003441	NAC domain
PROSITE profile	PS51005	60.521	24	176	IPR003441	NAC domain
Pfam	PF02365	2.3E-29	25	151	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MESTLNPMNN AREAEDEAEE NSQLPPGFRF HPTDEELVTY YLTKKILDST FSGRAIAEAD 60 LNKCEPWDLP GKAKMGEKEW YFFSLRDRKY PTRLRTNRAT EAGYWKTTGK DREIFNSRSS 120 ALVGMKKTLV FYKGRAPKGE KTNWVMHEYR LEGKFSYHRL PKNCKDEWVV CRIFQKSAGG 180 KKTSIGLLSR NSYLELPGSP SLPSLLESPY NTAALNDQET GSIESESGTN SAKAHVSCFS 240 TAMX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	4e-54	24	182	20	174	NAC domain-containing protein 19
3swm_B	4e-54	24	182	20	174	NAC domain-containing protein 19
3swm_C	4e-54	24	182	20	174	NAC domain-containing protein 19
3swm_D	4e-54	24	182	20	174	NAC domain-containing protein 19
3swp_A	4e-54	24	182	20	174	NAC domain-containing protein 19
3swp_B	4e-54	24	182	20	174	NAC domain-containing protein 19
3swp_C	4e-54	24	182	20	174	NAC domain-containing protein 19
3swp_D	4e-54	24	182	20	174	NAC domain-containing protein 19
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.17081	1e-177	root

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001292765.1	1e-105	uncharacterized protein LOC18434770
Refseq	XP_020523105.1	1e-105	uncharacterized protein LOC18434770 isoform X1
Refseq	XP_020523106.1	1e-105	uncharacterized protein LOC18434770 isoform X1
Swissprot	Q9FLJ2	1e-98	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	G0LD34	1e-147	G0LD34_GINBI; NACa protein (Fragment)
STRING	ERN06571	1e-105	(Amborella trichopoda)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53950.1	3e-96	NAC family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]