PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pta010037 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
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Family | MYB | ||||||||
Protein Properties | Length: 245aa MW: 27954.1 Da PI: 10.1478 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.7 | 8.2e-16 | 4 | 53 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 r+rW eEd ll+ +vk++G++ W++I+++m+ + R +k+c +rw +yl Pta010037 4 RQRWRSEEDSLLLSYVKRYGPREWNLISERMNraLDRDPKSCAERWKNYL 53 89**********************************************97 PP | |||||||
2 | Myb_DNA-binding | 28.6 | 3.4e-09 | 59 | 104 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+ +++E+ l + + +++G++ Wk+Ia+ ++ g t+k + +w y+ Pta010037 59 KGSLSEDEQRLVISLQAKYGNR-WKKIAAQVP-GTTAKRLSKWWEVYR 104 57789*****************.*********.*******99998886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 21.091 | 1 | 57 | IPR017930 | Myb domain |
SMART | SM00717 | 1.5E-12 | 3 | 55 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.81E-20 | 4 | 100 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.28E-10 | 6 | 53 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.1E-20 | 6 | 60 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 2.6E-15 | 7 | 68 | No hit | No description |
SMART | SM00717 | 2.3E-7 | 58 | 106 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 15.35 | 58 | 108 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.7E-13 | 61 | 104 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.51E-6 | 63 | 103 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MKERQRWRSE EDSLLLSYVK RYGPREWNLI SERMNRALDR DPKSCAERWK NYLKPGIKKG 60 SLSEDEQRLV ISLQAKYGNR WKKIAAQVPG TTAKRLSKWW EVYREKQDKI KDRNERTIAD 120 SATKIEEGKY DHILETFAEK YMQKQKQLAT SSGCNLPTIA AMPSGLPPPI SFSMPTSSTP 180 DFIHFAIPSA STPTTCSFGA LTPCPPPWMS NSQIQLMARG LNPFFILPLI KVQPSSSSSL 240 LYSFS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-17 | 7 | 100 | 10 | 100 | B-MYB |
1gv2_A | 6e-17 | 7 | 100 | 7 | 97 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 5e-17 | 7 | 100 | 7 | 97 | C-Myb DNA-Binding Domain |
1msf_C | 5e-17 | 7 | 100 | 7 | 97 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in lateral organ promordia. {ECO:0000269|PubMed:10102816, ECO:0000269|PubMed:16243907}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for normal cell differentiation. Interacts directly with asymmetric leaves 2 (AS2) to repress the knox homeobox genes. {ECO:0000269|PubMed:10102816, ECO:0000269|PubMed:12750468, ECO:0000269|PubMed:9655808}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008387764.2 | 4e-72 | transcription factor AS1 | ||||
Refseq | XP_028945423.1 | 4e-72 | transcription factor AS1 | ||||
Swissprot | Q9S7B2 | 1e-61 | RS2_MAIZE; Protein rough sheath 2 | ||||
TrEMBL | I6LJ18 | 2e-72 | I6LJ18_9LAMI; Phantastica | ||||
STRING | XP_008387764.1 | 2e-71 | (Malus domestica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37630.1 | 1e-63 | MYB family protein |