PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta008988

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

HD-ZIP

Protein Properties

Length: 279aa MW: 31542.8 Da PI: 5.055

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pta#S26642690	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.6	2.2e-18	65	119	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+++++ +q++ Le+ Fe ++++ e++ +LA++lgL+ rqV vWFqNrRa++k Pta008988 65 RKKRRLSLQQVRSLEKTFEVENKLEPERKLQLAQELGLQPRQVAVWFQNRRARWK 119 677799************************************************9 PP
2	HD-ZIP_I/II	125.1	3.2e-40	65	156	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kkrrls +qv++LE++Fe e+kLeperK +la+eLglqprqvavWFqnrRAR+ktkqlE+dy +Lk +y+ lk++ +++++e+++L++el+ Pta008988 65 RKKRRLSLQQVRSLEKTFEVENKLEPERKLQLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGQLKLNYECLKSNFDAIKQENQKLTSELN 156 69**************************************************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.7E-20	47	122	IPR009057	Homeodomain-like
SuperFamily	SSF46689	9.41E-21	55	123	IPR009057	Homeodomain-like
PROSITE profile	PS50071	18.544	61	121	IPR001356	Homeobox domain
SMART	SM00389	3.9E-17	64	125	IPR001356	Homeobox domain
Pfam	PF00046	8.8E-16	65	119	IPR001356	Homeobox domain
CDD	cd00086	1.49E-16	65	122	No hit	No description
PRINTS	PR00031	6.2E-6	92	101	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	96	119	IPR017970	Homeobox, conserved site
PRINTS	PR00031	6.2E-6	101	117	IPR000047	Helix-turn-helix motif
Pfam	PF02183	9.9E-15	121	161	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
RPGEDLGPHS NPNKDIAIPT RTKMETTGTF KFSIPSPLVG CPGNIHDDDE EEDEEECSGT 60 GQQTRKKRRL SLQQVRSLEK TFEVENKLEP ERKLQLAQEL GLQPRQVAVW FQNRRARWKT 120 KQLERDYGQL KLNYECLKSN FDAIKQENQK LTSELNYLKE KWEETQNLER DNTDLNKANE 180 EKKVFGMGED KAISDTKSLD KTMVCKQDHG GAEIKVTGVA MIFNEKLEGS ESESSAIVNE 240 QADNNNNNNS PHSIDSHIST LSLNCCYVPG PPVASSAIX

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	113	121	RRARWKTKQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028795054.1	7e-50	homeobox-leucine zipper protein ATHB-6-like
TrEMBL	A0A1I9W013	4e-47	A0A1I9W013_POPTO; Homeobox protein 16
TrEMBL	A0A2K2ACW6	4e-47	A0A2K2ACW6_POPTR; Uncharacterized protein
STRING	POPTR_0005s07290.1	1e-47	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22430.1	6e-43	homeobox protein 6