PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta008461
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family MYB_related
Protein Properties Length: 297aa    MW: 33965.3 Da    PI: 5.2044
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-70348PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding538.2e-171558146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     rg+ T+eE++l++++++++G++ W++Iar ++ gRt++++k++w++
        Pta008461 15 RGNITPEEQLLILELHRLWGNR-WSKIARQLP-GRTDNEIKNYWRT 58
                     7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.79E-17268IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.5E-6221IPR009057Homeodomain-like
PROSITE profilePS5129425.6081064IPR017930Myb domain
SMARTSM007174.4E-161462IPR001005SANT/Myb domain
PfamPF002494.1E-151558IPR001005SANT/Myb domain
CDDcd001679.09E-121958No hitNo description
Gene3DG3DSA:1.10.10.602.7E-192261IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
XRLRWLNYLR PDVKRGNITP EEQLLILELH RLWGNRWSKI ARQLPGRTDN EIKNYWRTRI  60
KKHIQKAHCD ANPRQLEDSL RYSWLSALLQ PKGIESSNQS AQAASSFEII QPSELDYMLS  120
QYKWMSGLET EIAGINEPGD SLNPASFRTS QGSIRSREYM NQNSRATFQD VHDMDQSTSE  180
KQNCYYHQSL FGYSNSDSVH HEISQAISPS EVGIDKDMGT PCNGVALVQP IMISESEELK  240
DIHESTAGFG IQYVNSEAQT SSCNNQISGI ETNWPQESNN TSLWNEELWY IPSSAQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-1526446108B-MYB
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.207180.0root| shoot
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.11e-38myb domain protein 112