PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta008031
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family MYB
Protein Properties Length: 317aa    MW: 35486.8 Da    PI: 7.0145
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-63215PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.86.7e-153683148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+ Ed +l ++++ +G g W+  +++ g++R++k+c++rw +yl
        Pta008031 36 RGAWTQKEDTILSEYIRIHGDGKWRHLPEKAGLKRCGKSCRLRWINYL 83
                     89********************************************97 PP
2Myb_DNA-binding46.67.8e-1589133147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+ +++E++l+v+++++lG++ W++Ia ++  gRt++++k++w+ +
        Pta008031  89 RGNISPDEEDLIVRLHRLLGNR-WSLIAGRLA-GRTDNEIKNYWNCH 133
                      7899******************.*********.***********977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-222786IPR009057Homeodomain-like
PROSITE profilePS5129423.2083187IPR017930Myb domain
SuperFamilySSF466891.28E-2633130IPR009057Homeodomain-like
SMARTSM007178.2E-123585IPR001005SANT/Myb domain
PfamPF002492.7E-133683IPR001005SANT/Myb domain
CDDcd001672.67E-93883No hitNo description
Gene3DG3DSA:1.10.10.601.4E-2387138IPR009057Homeodomain-like
SMARTSM007176.6E-1388136IPR001005SANT/Myb domain
PROSITE profilePS5129418.02988138IPR017930Myb domain
PfamPF002499.6E-1389131IPR001005SANT/Myb domain
CDDcd001677.28E-1193134No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
VPHKVDHQSV ELVIADYTGK SEMGRSPCCS KQGLNRGAWT QKEDTILSEY IRIHGDGKWR  60
HLPEKAGLKR CGKSCRLRWI NYLRPDIKRG NISPDEEDLI VRLHRLLGNR WSLIAGRLAG  120
RTDNEIKNYW NCHLCKKLLS INETQPKSSK HNLNRMSDNP ASPQNYVYRA IPVKATTAVR  180
QCEFENPNSS KGSSCSEIHS TDPALKLSNI KETKNSSQPS YDLLVNNDSK RMSFDVADVN  240
LVEIEGTDFP DLKLPHSHDF EGRASTLDGS VFDLPEICSS QSDFLTDLGV DGFYSGPATF  300
GGTETNEIGC VCFEPTN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-21101381128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.155690.0root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008337875.15e-71transcription factor MYB12 isoform X2
TrEMBLA0A167V9011e-102A0A167V901_PICAB; Transcription factor MYB30
STRINGXP_008337874.11e-68(Malus domestica)
STRINGGLYMA13G16890.17e-69(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.11e-61myb domain protein 3