PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta007218
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family MYB
Protein Properties Length: 376aa    MW: 42022.6 Da    PI: 4.9209
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-63610PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.21.1e-141663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+ Ed +l ++v+ +G g W+  +++ g++R++k+c++rw++yl
        Pta007218 16 RGAWTKREDMILSEYVRIHGDGGWRNLPEKAGLKRCGKSCRLRWLNYL 63
                     89********************************************97 PP
2Myb_DNA-binding47.44.6e-1574114648
                      HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      + E+el+++++++lG++ W++Ia +++ gRt++++k++w+++l
        Pta007218  74 PAEEELIIRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 114
                      67***************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.5E-21765IPR009057Homeodomain-like
PROSITE profilePS5129414.5821163IPR017930Myb domain
SuperFamilySSF466891.03E-2614110IPR009057Homeodomain-like
SMARTSM007171.0E-111565IPR001005SANT/Myb domain
PfamPF002492.1E-131663IPR001005SANT/Myb domain
CDDcd001677.87E-91863No hitNo description
PROSITE profilePS5129424.90764118IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-2466118IPR009057Homeodomain-like
SMARTSM007171.2E-1368116IPR001005SANT/Myb domain
PfamPF002491.9E-1374114IPR001005SANT/Myb domain
CDDcd001673.61E-1174114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
XKMGRSPCCS KEGLNRGAWT KREDMILSEY VRIHGDGGWR NLPEKAGLKR CGKSCRLRWL  60
NYLRPDIKRG NICPAEEELI IRLHRLLGNR WSLIAGRLPG RTDNEIKNYW NTHLSKKLSS  120
QESQDKTSKK LSTSSKSPVP VQNRVFKATA VKITTAVRHT EIIRPNACNG DGCSNFIPGE  180
ALKLCNVENT TKSSSCGLLV NNSTTSKQPE RNAFATTDNL VQTEATNCTS SMLNFGDQQS  240
PYSDYFEGDA ANLAESLLFL TDLSSPDCNL LASPSDCSTD FASEDLYRGP AALPEETNGF  300
EDMCSDQNNM QRVNCSSMDQ ELEEFYNNAQ DEDWIHELDC LENSGAQPLS SLLLESENEW  360
EERSIGKLAL EDHVQI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-23141205110B-MYB
1h8a_C4e-231411825128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.173510.0needle| root| shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1W2KRF40.0A0A1W2KRF4_PINRA; MYB transcription factor MYB6
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.16e-55myb domain protein 3