PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta006657
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family ERF
Protein Properties Length: 453aa    MW: 50019.5 Da    PI: 6.7407
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-75624PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.97.9e-21197246255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae+Aa+a+++a+++++g
  Pta006657 197 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEDAARAYDEAALRFRG 246
                7********.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.2E-14197246IPR001471AP2/ERF domain
SMARTSM003801.2E-37197260IPR001471AP2/ERF domain
PROSITE profilePS5103225.554197254IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-23197255IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.6E-33197256IPR001471AP2/ERF domain
PRINTSPR003677.7E-12198209IPR001471AP2/ERF domain
CDDcd000181.56E-27205255No hitNo description
PRINTSPR003677.7E-12220236IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
LNYKVADQGG GGRAMRGDRD REIKEEKEGG DQQNSYFNPH GAPAQAEMSA MVSALSQVVA  60
GRGGAAPQEW PLPQSTTTGV KEWPLPQSTA TGVKREREKE NESGEMLGEM GRGQYYSDPR  120
FHASEFMQGS IISRPRLFHQ QESIKPPQLG MWQTIQPSAQ AAATLRPPPP PAGSSSEETQ  180
TELSTGEAVV SVERRRRYRG VRQRPWGKWA AEIRDPHKAA RVWLGTFDTA EDAARAYDEA  240
ALRFRGSRAK LNFPEEAQLI LRPPPAHNNP PPPLHATQNL PPTTTTPPSR FGGGGGAGPM  300
LPLQQRPQIQ DNFPVEYYEY ARLLQTPEPE PMPEREQLSM QPLLRQYLAA QQQTQFDTAQ  360
NSPSGSFWNL NPAVSSQTDE RGPTSSEAEQ FPWPPTSGYL TRPPAAQPPT LPDFTESGHV  420
SDFPGIPHQF GQSGRPPSSG PSTWRQLYPR PPQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-23196254463ATERF1
3gcc_A1e-23196254463ATERF1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1192197ERRRRY
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.164890.0embryo| root| shoot
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.11e-19ethylene response factor 110