PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Pta005142 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
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Family | WRKY | ||||||||||||
Protein Properties | Length: 201aa MW: 21783.3 Da PI: 10.1161 | ||||||||||||
Description | WRKY family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 103.7 | 1e-32 | 130 | 188 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+vers +dp+++++tYegeHnh+ Pta005142 130 ADEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERSLDDPSMLIVTYEGEHNHS 188 69*************************988****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 2.4E-19 | 80 | 127 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 9.4E-35 | 117 | 189 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.79 | 124 | 190 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.37E-28 | 127 | 189 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.2E-40 | 129 | 189 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.0E-28 | 131 | 187 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
XQGSKPITDF SMALTNHAAA TDFYGHRKDS VCSSPPLSNT NSFLSSITGD GSVVSTDKRP 60 SMLLASFPPS SGRPPLSSSK KKCHGKSNDT DGGKHCGPSG RCHCSKRRKS RVKRTIKVPA 120 ISAKMADIPA DEYSWRKYGQ KPIKGSPHPR GYYKCSSVRG CPARKHVERS LDDPSMLIVT 180 YEGEHNHSQS MSESTGLVVD P |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 7e-22 | 117 | 187 | 2 | 71 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pta.15112 | 0.0 | root| shoot |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Regulates rhizobacterium B.cereus AR156-induced systemic resistance (ISR) to P.syringae pv. tomato DC3000, probably by activating the jasmonic acid (JA)- signaling pathway (PubMed:26433201). {ECO:0000250, ECO:0000269|PubMed:26433201}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly during leaf senescence (PubMed:11722756). Repressed by rhizobacterium B.cereus AR156 in leaves, and to a lower extent, by P.fluorescens WCS417r (PubMed:26433201). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:26433201}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010270802.1 | 6e-74 | PREDICTED: probable WRKY transcription factor 7 | ||||
Swissprot | Q9SV15 | 4e-61 | WRK11_ARATH; Probable WRKY transcription factor 11 | ||||
TrEMBL | A0A3G6JAF5 | 1e-143 | A0A3G6JAF5_PINTA; WRKY DNA-binding protein 11 | ||||
STRING | XP_010270802.1 | 2e-73 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28650.1 | 6e-61 | WRKY DNA-binding protein 74 |