PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta004652
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family ERF
Protein Properties Length: 226aa    MW: 25725.2 Da    PI: 10.6309
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S25090863PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-54827PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.52.6e-11106147351
        AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                 +GV++  k+ +W A I++      +k+++lg+ g+ eeAa ++++a+ 
  Pta004652 106 MRGVYF--KNMKWQAAIKVE-----KKQIHLGTVGSQEEAAHLYDRAAF 147
                79**98..47*********6.....6********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.9E-5105148IPR001471AP2/ERF domain
SMARTSM003803.1E-4105162IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-7106150IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.9E-6108152IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MVSIRRRKHL RLSPGTNTYL VQLARLNETC EVAHRSIENA KLNFGRPMFL NDAGGQKQVL  60
EPSLGSSNVS GCSSSKESKP QNSGHEVKRR KRQRRKQFDN QEPCLMRGVY FKNMKWQAAI  120
KVEKKQIHLG TVGSQEEAAH LYDRAAFMCG REPNFELSEE EKQELSRFNW EQFLEITRNA  180
ITSKKHQKKL EAGLRKKQLN HAQASQQAVK AQTSTVQAAD AGVSNF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.20280.0needle| root| shoot| xylem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010242670.12e-76PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X2
RefseqXP_019051495.12e-76PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X2
RefseqXP_019051496.12e-76PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X2
TrEMBLA9NNY91e-144A9NNY9_PICSI; Uncharacterized protein
STRINGXP_010242670.18e-76(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.12e-47ERF family protein