PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta004070
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family MYB
Protein Properties Length: 253aa    MW: 28375.2 Da    PI: 6.2527
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S25805486PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-60641PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.21.4e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l+  +  +G  +W+++++  g+ R++k+c++rw +yl
        Pta004070 14 KGPWTAEEDQKLISFILNHGHCCWRAVPKLAGLLRCGKSCRLRWTNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding54.92.1e-1770111447
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       ++ E++l++d++ qlG++ W++Ia++++ gRt++++k++w+++
        Pta004070  70 LSESEEQLIIDLHSQLGNR-WSKIAAHLP-GRTDNEIKNYWNTH 111
                      5899***************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-22563IPR009057Homeodomain-like
PROSITE profilePS5129414.888961IPR017930Myb domain
SuperFamilySSF466893.29E-2811108IPR009057Homeodomain-like
SMARTSM007171.0E-121363IPR001005SANT/Myb domain
PfamPF002492.3E-151461IPR001005SANT/Myb domain
CDDcd001674.23E-101661No hitNo description
PROSITE profilePS5129427.03662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.0E-2664117IPR009057Homeodomain-like
SMARTSM007174.1E-1666114IPR001005SANT/Myb domain
PfamPF002491.9E-1570111IPR001005SANT/Myb domain
CDDcd001675.99E-1371112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MGRQPCCDKV GLKKGPWTAE EDQKLISFIL NHGHCCWRAV PKLAGLLRCG KSCRLRWTNY  60
LRPDLKRGLL SESEEQLIID LHSQLGNRWS KIAAHLPGRT DNEIKNYWNT HIKKKLKRMG  120
IDPVTHGPII DQAEGKPSKP ALDEVTEESD ARTSKKAILQ AATEVSCRSN DSEITEEADK  180
SIDSVKDVKL EAAQLATGYG FDLMPMLFDE RSTTIYLCDL PVTETQNLEN SSLDFVSNAV  240
FRGASDDQSL LEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-30121165108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in chalaza of mature seeds, cotyledons, rosette leaves, cauline leaves, veins of stems, mature siliques, sepals and styles. Expressed at low levels in roots. {ECO:0000269|PubMed:23660402}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020269974.13e-88protein ODORANT1-like
RefseqXP_020269975.13e-88protein ODORANT1-like
SwissprotQ9C7U75e-84MYB20_ARATH; Transcription factor MYB20
TrEMBLA0A3G9EG969e-86A0A3G9EG96_9LILI; R2R3-MYB transcription factor ODORANT1 (Fragment)
TrEMBLA0A3Q7Y8109e-86A0A3Q7Y810_CICAR; transcription factor MYB20
STRINGXP_004490820.16e-87(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66230.12e-86myb domain protein 20
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]