PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta003636
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family DBB
Protein Properties Length: 272aa    MW: 29764.4 Da    PI: 4.7211
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S26629430PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-60782548PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.69.1e-07446541
   zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                C+ +e+  ++  C  ++  lC++C  + Hk       H++ +
  Pta003636  4 QCDACEQATASVICCADEAALCRECDIKVHKAnklaskHKRLS 46
               7*****************************8888888888765 PP
2zf-B_box32.12.4e-105494337
   zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                 +C+ +++  ++ fC +++ +lC+dC ++ H++      H
  Pta003636 54 LSRCDICQDRAAIVFCLEDRAMLCQDCDESVHSRdtlaakH 94
               679******99*********************885555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.769147IPR000315B-box-type zinc finger
CDDcd000214.37E-6347No hitNo description
PfamPF006432.4E-5446IPR000315B-box-type zinc finger
SMARTSM003361.1E-8447IPR000315B-box-type zinc finger
SMARTSM003362.1E-125299IPR000315B-box-type zinc finger
PROSITE profilePS501199.7415299IPR000315B-box-type zinc finger
PfamPF006435.9E-95494IPR000315B-box-type zinc finger
CDDcd000217.73E-85698No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MQIQCDACEQ ATASVICCAD EAALCRECDI KVHKANKLAS KHKRLSLLET SPKLSRCDIC  60
QDRAAIVFCL EDRAMLCQDC DESVHSRDTL AAKHQRFLAT GIRVGLNAQS SESPGSNEFD  120
KQPSSISNPT APTHATPRMG STHSSSAKSI PLGEPCWSMD ELLPISDFES KGDPEGLGEF  180
DWEVDGLDHL GLFEQQQEQE EALACRVPEL CPTGPAGGRP NFTVKGKSKA EIPTVPDFDE  240
ACIVPDIGSL DTHEFYPTPQ LKRARRSSFE AW
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.26180.0embryo| needle| root| shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001315848.12e-66B-box zinc finger protein 24-like
TrEMBLC0PQL71e-159C0PQL7_PICSI; Uncharacterized protein
STRINGXP_004309809.11e-65(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06040.12e-56DBB family protein