PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta003314
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family G2-like
Protein Properties Length: 287aa    MW: 32155.8 Da    PI: 8.034
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S24129530PU_refUnigeneView CDS
PUT-157a-Pinus_taeda-63234PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like80.51.9e-25251555
    G2-like  5 rWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
               +Wt +LH+rFv+a++q  G ++A Pk+ile+m+v+gLt+e+v+SHLQkYRl
  Pta003314  2 HWTAQLHQRFVKAINQT-GLDNAAPKRILEIMNVPGLTRENVASHLQKYRL 51
               6***************9.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.63154IPR017930Myb domain
TIGRFAMsTIGR015572.1E-22251IPR006447Myb domain, plants
PfamPF002491.3E-6250IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-26256IPR009057Homeodomain-like
SuperFamilySSF466894.03E-18255IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
XHWTAQLHQR FVKAINQTGL DNAAPKRILE IMNVPGLTRE NVASHLQKYR LYLKRLSGSI  60
PEPRPVASFQ AARDSKFGGT MQIRKRGKPT PSSSSSSSSS SALKTSPSPL SLELSRNLDH  120
ATLKSLEQFQ AYERKLVANR VQMLRGVATA AADESAPQSF KVDFAKLAET KPLTRIFGLS  180
THQPQFQNPA PTTESLEESD VHKEEAKRLI DETQTIDQEE LLFNNFVAEN FPHVQIPSDH  240
DQMPTLIASA GDLSEEYFML GEAFLPRPGD KEEIHKYIFH NTKLLVX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A1e-18354657Transcription factor LUX
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.163080.0embryo| root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5A9D61e-46D5A9D6_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01760.14e-25response regulator 14