PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pta003107 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
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Family | DBB | ||||||||
Protein Properties | Length: 296aa MW: 32391.8 Da PI: 5.5927 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 21.6 | 4.5e-07 | 4 | 45 | 5 | 40 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 C+ +++ e++ fC ++ lC +C ++ H H++ Pta003107 4 QCDACQSAEASVFCCADEAALCMKCDSKVHDAnklaskHRRL 45 7*****************************446777778765 PP | |||||||
2 | zf-B_box | 31 | 5.3e-10 | 58 | 98 | 3 | 37 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 +C+ ++e ++ +fC+ ++ lC+dC l++H+ H Pta003107 58 SLICDICQERRAFFFCQADRAVLCRDCDLSIHSAneltakH 98 569*****************************656666666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 1.5E-9 | 1 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.466 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.95E-7 | 3 | 44 | No hit | No description |
Pfam | PF00643 | 1.7E-5 | 4 | 46 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.395 | 56 | 103 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 5.8E-16 | 56 | 103 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 6.5E-8 | 58 | 99 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.21E-11 | 60 | 103 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MKVQCDACQS AEASVFCCAD EAALCMKCDS KVHDANKLAS KHRRLSLLEP SSSSSSDSLI 60 CDICQERRAF FFCQADRAVL CRDCDLSIHS ANELTAKHNR FLVPGTRVSL KPIETLAAPE 120 KAVATAAVTK ALIPPVQKMP DHAQPSMDLP VETVTASTSN SEFSQYLSEV EQFLTSASPE 180 RLDWGGSAEA HAIGKYMESA WAPNLGLLPE GFYGDSLAEV PHLPSPTTDS GFCMYGQFGI 240 TMKPKAKQQV QNVPYFLAGF ETDKDNFTVP DIVLPPSAKR MRMSNTTLHD QQFFIL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A9NVK4 | 0.0 | A9NVK4_PICSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75540.1 | 3e-40 | salt tolerance homolog2 |